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CI Python 3.8-3.12 uv Ruff pre-commit

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dnadesign-data is the source-data companion for dnadesign. It keeps curated primary literature, RegulonDB, and EcoCyc data in one place, plus tools for EcoCyc/GO annotations, BioCyc SmartTables, and literature-specific processing.


Documentation

  • Docs index: choose the right route for data catalogs, adapter workflows, package APIs, credentials, CI, and agent work.
  • Data sources: detailed catalog of curated literature, RegulonDB, EcoCyc, and generated annotation artifacts.
  • Package APIs: public catalog modules and source CLI for downstream tools.
  • Functional annotations: EcoCyc/GO artifacts, BioCyc SmartTables, credential handoff, and provenance outputs.
  • Architecture, Design, Security, Quality score: repository contracts and review gates.

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This repository contains datasets from sources like RegulonDB, EcoCyc, and primary literature data.

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