Installation hangs with "testing if installed package can be loaded from temporary location"

[hernanmd]

Installation hangs while testing package loading of "dyerlab/gstudio" using macOS highSierra with latest R as of 04-06-2020 (4.0.0).
The expressions used for installation are :

install.packages( c("RgoogleMaps",
                    "geosphere",
                    "proto",
                    "sampling",
                    "seqinr",
                    "spacetime",
                    "spdep"), 
                  dependencies=TRUE )
install.packages("devtools")
library(devtools)
install_github("dyerlab/popgraph")
install_github("dyerlab/gstudio")

Last lines of installation console reports:

─  preparing ‘gstudio’:
✓  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘gstudio_1.5.2.tar.gz’
   
* installing *source* package ‘gstudio’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

[dyerlab]

So can you install these packages by themselves? Which one stops and what are the error messages? -- Rodney J. Dyer, PhD Director, Center for Environmental Studies <https://ces.vcu.edu/> Virginia Commonwealth University http://dyerlab.com

…

On Wed, Jun 3, 2020 at 4:32 PM Hernán Morales Durand < ***@***.***> wrote: Installation hangs while testing package loading of "dyerlab/gstudio" using macOS highSierra with latest R as of 04-06-2020 (4.0.0). The expressions used for installation are : install.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE ) install.packages("devtools") library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio") — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#12>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AA5B3TQTRE5PWFCWMY2XPF3RU2TVNANCNFSM4NR7JAJQ> .

[hernanmd]

There are no error messages, installation hangs meaning R does not respond anymore and I should terminate R manually from another shell command line terminal.
The line which causes the hang is:

install_github("dyerlab/gstudio")

Maybe you could output your R and package versions to check which dependencies are currently working for gstudio?

Anyway this should be reproducible with R as of 04-06-2020 (4.0.0).

[hernanmd]

To clarify, all package dependencies were installed successfully, i.e. no error messages.
The hang problem only occurs during the evaluation of :

install_github("dyerlab/gstudio")

[dyerlab]

So, nothing happens? No messages, nothing?

…

-- Rodney J. Dyer, PhD Director, Center for Environmental Studies <https://ces.vcu.edu/> Virginia Commonwealth University http://dyerlab.com

On Wed, Jun 17, 2020 at 8:27 PM Hernán Morales Durand < ***@***.***> wrote: To clarify, all package dependencies were installed successfully, i.e. no error messages. The hang problem only occurs during the evaluation of : install_github("dyerlab/gstudio") — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#12 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AA5B3TVSVZHJ2MPCQ3HBXTLRXFNNDANCNFSM4NR7JAJQ> .

[hernanmd]

Exactly, maybe you could let us know which package versions you're using in your working environment?

ip <- as.data.frame(installed.packages()[,c(1,3:4)])
rownames(ip) <- NULL
ip <- ip[is.na(ip$Priority),1:2,drop=FALSE]
print(ip, row.names=FALSE)

and

sessionInfo()

[asqatqazet]

Is this issue solved?

[dyerlab]

If I remember correctly, this may be more of a platform issue. Do not load from temporary drives. Am I remembering this incorrectly? Dr. D

…

On Dec 19, 2024, at 9:26 AM, Askhat Khazet(Asihati Hazaiti) ***@***.***> wrote: Is this issue solved? — Reply to this email directly, view it on GitHub <https://www.google.com/url?q=https://github.com/dyerlab/gstudio/issues/12%23issuecomment-2554286698&source=gmail-imap&ust=1735223166000000&usg=AOvVaw1SzMLTTq6JOAVd1Ge58w2s>, or unsubscribe <https://www.google.com/url?q=https://github.com/notifications/unsubscribe-auth/AA5B3TRYS6M5ZJTPNS63HDD2GLJPVAVCNFSM6AAAAABT5DOCSOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNJUGI4DMNRZHA&source=gmail-imap&ust=1735223166000000&usg=AOvVaw032gGWmScIw94ybUqoj1LK>. You are receiving this because you commented.