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patchclamp

Scripts for python analysis of patch-clamp recordings.

Currently contains:

  • memtest.ipynb
  • action_spectra.ipynb

Installation

  1. Clone the repo
$ git clone https://github.com/deisseroth-lab/patchclamp.git
$ cd patchclamp
  1. Create conda environment
$ conda env create -f environment.yml
  1. Activate the conda environment
$ conda activate patchclamp
  1. Run the Jupyter notebooks (e.g.
$ jupyter-lab

Reference for pyABF:

"Analysis of electrophysiological recordings was performed with custom software written for this project using Python 3.7 and the pyABF module¹." [1] Harden, SW (2020). pyABF 2.2.3. [Online]. Available: https://pypi.org/project/pyabf/, Accessed on: Sep. 24, 2019.