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},
{
"descr": "Property not found in",
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{
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"start": 11,
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{
"descr": "Property not found in",
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{
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"line": 44,
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"start": 10,
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{
"descr": "Property not found in",
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{
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{
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{
"descr": "Property not found in",
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{
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{
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},
{
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{
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},
{
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{
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},
{
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},
{
"message": [
{
"descr": "property `getFlag`",
"level": "error",
"path": "/Users/danvk/github/pileup.js/src/main/SamRead.js",
"line": 99,
"endline": 101,
"start": 3,
"end": 3
},
{
"descr": "Property not found in",
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{
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"endline": 37,
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}
]
},
{
"message": [
{
"descr": "property `getFull`",
"level": "error",
"path": "/Users/danvk/github/pileup.js/src/main/SamRead.js",
"line": 108,
"endline": 114,
"start": 3,
"end": 3
},
{
"descr": "Property not found in",
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{
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},
{
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{
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"line": 156,
"endline": 158,
"start": 3,
"end": 3
},
{
"descr": "Property not found in",
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{
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},
{
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{
"descr": "property `getQualPhred`",
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"path": "/Users/danvk/github/pileup.js/src/main/SamRead.js",
"line": 160,
"endline": 162,
"start": 3,
"end": 3
},
{
"descr": "Property not found in",
"level": "error",
"path": "",
"line": 0,
"endline": 0,
"start": 1,
"end": 0
},
{
"descr": "object type",
"level": "error",
"path": "/Users/danvk/github/pileup.js/src/main/Alignment.js",
"line": 23,
"endline": 37,
"start": 25,
"end": 1
}
]
},
{
"message": [
{
"descr": "property `debugString`",
"level": "error",
"path": "/Users/danvk/github/pileup.js/src/main/SamRead.js",
"line": 209,
"endline": 220,
"start": 3,
"end": 3
},
{
"descr": "Property not found in",
"level": "error",
"path": "",
"line": 0,
"endline": 0,
"start": 1,
"end": 0
},
{
"descr": "object type",
"level": "error",
"path": "/Users/danvk/github/pileup.js/src/main/Alignment.js",
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}
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}
],
"version": "14de35fd20e92eaf46e34428f72d108ed3f36c70 Sep 10 2015 13:14:20"
}
I'm getting the following error when running
flowerywith FlowType 0.15:Here's the output of
flow --json:{ "passed": false, "errors": [ { "message": [ { "descr": "property `buffer`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 40, "endline": 40, "start": 11, "end": 21 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `offset`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 41, "endline": 41, "start": 11, "end": 23 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `refID`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 44, "endline": 44, "start": 10, "end": 15 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `l_seq`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 46, "endline": 46, "start": 10, "end": 15 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `_full`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 49, "endline": 49, "start": 11, "end": 16 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `_seq`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 50, "endline": 50, "start": 10, "end": 15 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `_interval`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 51, "endline": 51, "start": 15, "end": 36 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `_getJDataView`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 78, "endline": 81, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `getFlag`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 99, "endline": 101, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `getFull`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 108, "endline": 114, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `getCigarString`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 156, "endline": 158, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `getQualPhred`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 160, "endline": 162, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] }, { "message": [ { "descr": "property `debugString`", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/SamRead.js", "line": 209, "endline": 220, "start": 3, "end": 3 }, { "descr": "Property not found in", "level": "error", "path": "", "line": 0, "endline": 0, "start": 1, "end": 0 }, { "descr": "object type", "level": "error", "path": "/Users/danvk/github/pileup.js/src/main/Alignment.js", "line": 23, "endline": 37, "start": 25, "end": 1 } ] } ], "version": "14de35fd20e92eaf46e34428f72d108ed3f36c70 Sep 10 2015 13:14:20" }