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<!DOCTYPE html>
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<meta name="generator" content="quarto-1.4.553">
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<meta name="author" content="Eduard Klapwijk">
<title>Code for Figures 3-4 based on Pearson’s correlations</title>
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<body class="fullcontent">
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<div class="quarto-title">
<h1 class="title">Code for Figures 3-4 based on Pearson’s correlations</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Eduard Klapwijk </p>
</div>
</div>
</div>
</header>
<p>Load libraries to produce figures:</p>
<p>Set seed and create Figure 3a for the Feedback task DLPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="co"># calculate difference mfg_learning vs. mfg_application</span></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a>data_feedback <span class="ot"><-</span> feedback</span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a>data_feedback<span class="sc">$</span>dif <span class="ot"><-</span> data_feedback<span class="sc">$</span>mfg_learning <span class="sc">-</span> data_feedback<span class="sc">$</span>mfg_application</span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate correlations</span></span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a>feedback_fig <span class="ot"><-</span> <span class="fu">estim_corr</span>(<span class="at">data =</span> data_feedback,</span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"dif"</span>, <span class="st">"age"</span>),</span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">271</span>, </span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"A. Feedback DLPFC corr. with age"</span>)</span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 3a</span></span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_corr</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-3a" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-3a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-3a-1.png" id="fig-3a" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-3a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 1
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 4a for the Feedback task DLPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 4a</span></span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_corr_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-4a" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-4a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-4a-1.png" id="fig-4a" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-4a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 2
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 3b for the Gambling task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate correlations</span></span>
<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a>gambling_fig <span class="ot"><-</span> <span class="fu">estim_corr</span>(<span class="at">data =</span> gambling, </span>
<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"lnacc_self_winvsloss"</span>, </span>
<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"age"</span>), </span>
<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">221</span>, </span>
<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"B. Gambling NAcc corr. with age"</span>)</span>
<span id="cb3-11"><a href="#cb3-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb3-12"><a href="#cb3-12" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 3b</span></span>
<span id="cb3-13"><a href="#cb3-13" aria-hidden="true" tabindex="-1"></a>gambling_fig<span class="sc">$</span>fig_corr</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-3b" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-3b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-3b-1.png" id="fig-3b" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-3b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 3
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 4b for the Gambling task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 4b</span></span>
<span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a>gambling_fig<span class="sc">$</span>fig_corr_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-4b" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-4b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-4b-1.png" id="fig-4b" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-4b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 4
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 3c for the Self-evaluations task mPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a><span class="co"># calculate difference mpfc_self - mpfc_control</span></span>
<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a>data_self <span class="ot"><-</span> self_eval</span>
<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a>data_self<span class="sc">$</span>dif <span class="ot"><-</span> data_self<span class="sc">$</span>mpfc_self <span class="sc">-</span> data_self<span class="sc">$</span>mpfc_control</span>
<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate correlations</span></span>
<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a>selfeval_fig <span class="ot"><-</span> <span class="fu">estim_corr</span>(<span class="at">data =</span> data_self,</span>
<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"dif"</span>,</span>
<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a> <span class="st">"age"</span>),</span>
<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">149</span>, </span>
<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb5-14"><a href="#cb5-14" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"C. Self-evaluations mPFC corr. with age"</span>)</span>
<span id="cb5-15"><a href="#cb5-15" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-16"><a href="#cb5-16" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 3c</span></span>
<span id="cb5-17"><a href="#cb5-17" aria-hidden="true" tabindex="-1"></a>selfeval_fig<span class="sc">$</span>fig_corr</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-3c" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-3c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-3c-1.png" id="fig-3c" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-3c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 5
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 4c for the Self-evaluations task mPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 4c</span></span>
<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a>selfeval_fig<span class="sc">$</span>fig_corr_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-4c" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-4c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-4c-1.png" id="fig-4c" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-4c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 6
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 3D for the Gaining for self task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb7-3"><a href="#cb7-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-4"><a href="#cb7-4" aria-hidden="true" tabindex="-1"></a><span class="co"># calculate difference nacc_selfgain vs. nacc_bothnogain</span></span>
<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a>data_vicar <span class="ot"><-</span> vicar_char</span>
<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a>data_vicar<span class="sc">$</span>dif <span class="ot"><-</span> data_vicar<span class="sc">$</span>nacc_selfgain <span class="sc">-</span> data_vicar<span class="sc">$</span>nacc_bothnogain</span>
<span id="cb7-7"><a href="#cb7-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate correlations</span></span>
<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a>vicar_char_fig <span class="ot"><-</span> <span class="fu">estim_corr</span>(<span class="at">data =</span> data_vicar, </span>
<span id="cb7-10"><a href="#cb7-10" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"dif"</span>, </span>
<span id="cb7-11"><a href="#cb7-11" aria-hidden="true" tabindex="-1"></a> <span class="st">"age"</span>),</span>
<span id="cb7-12"><a href="#cb7-12" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">156</span>, </span>
<span id="cb7-13"><a href="#cb7-13" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb7-14"><a href="#cb7-14" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"D. Gaining self NAcc corr. with age"</span>)</span>
<span id="cb7-15"><a href="#cb7-15" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-16"><a href="#cb7-16" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 3d</span></span>
<span id="cb7-17"><a href="#cb7-17" aria-hidden="true" tabindex="-1"></a>vicar_char_fig<span class="sc">$</span>fig_corr</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-3d" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-3d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-3d-1.png" id="fig-3d" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-3d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 7
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 4d for the Gaining for self task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 4d</span></span>
<span id="cb8-2"><a href="#cb8-2" aria-hidden="true" tabindex="-1"></a>vicar_char_fig<span class="sc">$</span>fig_corr_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-4d" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-4d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-4d-1.png" id="fig-4d" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-4d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 8
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 3 (4 data sets combined):</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 3 using patchwork library</span></span>
<span id="cb9-2"><a href="#cb9-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_corr <span class="sc">+</span> gambling_fig<span class="sc">$</span>fig_corr <span class="sc">+</span> selfeval_fig<span class="sc">$</span>fig_corr <span class="sc">+</span> vicar_char_fig<span class="sc">$</span>fig_corr</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-3-total" class="quarto-figure quarto-figure-center quarto-float anchored">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-3-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-3-total-1.png" class="img-fluid figure-img" width="960">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-3-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 9: Estimates of Pearson’s correlation between age and the task effect for five different sample sizes (starting with <span class="math inline">\(N=20\)</span>, then 1/5th parts of the total dataset). For each sample size 10 randomly chosen HDCI’s out of the 1000 HDCI’s computed are displayed (in green, permutation numbers used are displayed to the right of each subfigure). The average estimate with credible interval summarizing the 1000 HDCI’s for each sample size are plotted in orange. DLPFC = dorsolateral prefrontal cortex; mPFC = medial prefrontal cortex; NAcc = nucleus accumbens. Age is modeled as linearly increasing or decreasing.
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 4 (4 data sets combined):</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb10"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 4 using patchwork library</span></span>
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_corr_nozero <span class="sc">+</span> gambling_fig<span class="sc">$</span>fig_corr_nozero <span class="sc">+</span> selfeval_fig<span class="sc">$</span>fig_corr_nozero <span class="sc">+</span> vicar_char_fig<span class="sc">$</span>fig_corr_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-4-total" class="quarto-figure quarto-figure-center quarto-float anchored">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-4-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-correlations_files/figure-html/fig-4-total-1.png" class="img-fluid figure-img" width="960">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-4-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 10: For each task, for five different sample sizes (starting with <span class="math inline">\(N=20\)</span>, then 1/5th parts of the total dataset), the proportion of intervals not containing the value 0 is plotted in orange. Age is modeled as linearly increasing or decreasing.
</figcaption>
</figure>
</div>
</div>
</div>
<p>Extract numbers to produce table 3:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="co"># first extract tibble from results (select mean only)</span></span>
<span id="cb11-2"><a href="#cb11-2" aria-hidden="true" tabindex="-1"></a>feedback_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(feedback_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-3"><a href="#cb11-3" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-4"><a href="#cb11-4" aria-hidden="true" tabindex="-1"></a>gambling_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(gambling_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-5"><a href="#cb11-5" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-6"><a href="#cb11-6" aria-hidden="true" tabindex="-1"></a>selfeval_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(selfeval_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-7"><a href="#cb11-7" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-8"><a href="#cb11-8" aria-hidden="true" tabindex="-1"></a>gaining_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(vicar_char_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-9"><a href="#cb11-9" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>Use numbers to produce a table in text:</p>
<table class="table">
<colgroup>
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
</colgroup>
<thead>
<tr class="header">
<th>task</th>
<th>brain region</th>
<th>n = 20</th>
<th>n = 2/5</th>
<th>n = 3/5</th>
<th>n = 4/5</th>
<th>N = total</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Feedback</td>
<td>DLPFC</td>
<td><strong>0.38</strong> (-0.06, 0.69)</td>
<td><strong>0.38</strong> (0.16, 0.56), <em>n =</em> 70</td>
<td><strong>0.37</strong> (0.21, 0.52), <em>n =</em> 120</td>
<td><strong>0.38</strong> (0.24, 0.5), <em>n =</em> 170</td>
<td><strong>0.38</strong> (0.27, 0.47), <em>N</em> = 271</td>
</tr>
<tr class="even">
<td>Gambling</td>
<td>NAcc</td>
<td><strong>-0.02</strong> (-0.44, 0.4)</td>
<td><strong>-0.04</strong> (-0.29, 0.21), <em>n =</em> 60</td>
<td><strong>-0.04</strong> (-0.23, 0.16), <em>n =</em> 100</td>
<td><strong>-0.04</strong> (-0.2, 0.13), <em>n =</em> 140</td>
<td><strong>-0.04</strong> (-0.17, 0.09), <em>N =</em> 221</td>
</tr>
<tr class="odd">
<td>Self-evaluations</td>
<td>mPFC</td>
<td><strong>0.07</strong> (-0.36, 0.48)</td>
<td><strong>0.06</strong> (-0.23, 0.34), <em>n =</em> 46</td>
<td><strong>0.06</strong> (-0.17, 0.29), <em>n =</em> 72</td>
<td><strong>0.06</strong> (-0.14, 0.25), <em>n =</em> 98</td>
<td><strong>0.06</strong> (-0.1, 0.22), <em>N</em> = 149</td>
</tr>
<tr class="even">
<td>Gaining self</td>
<td>NAcc</td>
<td><strong>-0.18</strong> (-0.56, 0.26)</td>
<td><strong>-0.17</strong> (-0.44, 0.11), <em>n =</em> 47</td>
<td><strong>-0.17</strong> (-0.38, 0.06), <em>n =</em> 74</td>
<td><strong>-0.17</strong> (-0.35, 0.03), <em>n =</em> 101</td>
<td><strong>-0.17</strong> (-0.31, -0.01), <em>N</em> = 156</td>
</tr>
</tbody>
</table>
</main>
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const xref = xrefs[i];
tippyHover(xref, undefined, function(instance) {
instance.disable();
let url = xref.getAttribute('href');
let hash = undefined;
if (url.startsWith('#')) {
hash = url;
} else {
try { hash = new URL(url).hash; } catch {}
}
if (hash) {
const id = hash.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note !== null) {
try {
const html = processXRef(id, note.cloneNode(true));
instance.setContent(html);
} finally {
instance.enable();
instance.show();
}
} else {
// See if we can fetch this
fetch(url.split('#')[0])
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.getElementById(id);
if (note !== null) {
const html = processXRef(id, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
} else {
// See if we can fetch a full url (with no hash to target)
// This is a special case and we should probably do some content thinning / targeting
fetch(url)
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.querySelector('main.content');
if (note !== null) {
// This should only happen for chapter cross references
// (since there is no id in the URL)
// remove the first header
if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
note.children[0].remove();
}
const html = processXRef(null, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
}, function(instance) {
});
}
let selectedAnnoteEl;
const selectorForAnnotation = ( cell, annotation) => {
let cellAttr = 'data-code-cell="' + cell + '"';
let lineAttr = 'data-code-annotation="' + annotation + '"';
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
return selector;
}
const selectCodeLines = (annoteEl) => {
const doc = window.document;
const targetCell = annoteEl.getAttribute("data-target-cell");
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {
//compute the position of the single el (top and bottom and make a div)
const el = window.document.getElementById(lineIds[0]);
top = el.offsetTop;
height = el.offsetHeight;
parent = el.parentElement.parentElement;
if (lineIds.length > 1) {
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
height = bottom - top;
}
if (top !== null && height !== null && parent !== null) {
// cook up a div (if necessary) and position it
let div = window.document.getElementById("code-annotation-line-highlight");
if (div === null) {
div = window.document.createElement("div");
div.setAttribute("id", "code-annotation-line-highlight");
div.style.position = 'absolute';
parent.appendChild(div);
}
div.style.top = top - 2 + "px";
div.style.height = height + 4 + "px";
div.style.left = 0;
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
if (gutterDiv === null) {
gutterDiv = window.document.createElement("div");
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
gutterDiv.style.position = 'absolute';
const codeCell = window.document.getElementById(targetCell);
const gutter = codeCell.querySelector('.code-annotation-gutter');
gutter.appendChild(gutterDiv);
}
gutterDiv.style.top = top - 2 + "px";
gutterDiv.style.height = height + 4 + "px";
}
selectedAnnoteEl = annoteEl;
}
};
const unselectCodeLines = () => {
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
elementsIds.forEach((elId) => {
const div = window.document.getElementById(elId);
if (div) {
div.remove();
}
});
selectedAnnoteEl = undefined;
};
// Handle positioning of the toggle
window.addEventListener(
"resize",
throttle(() => {
elRect = undefined;
if (selectedAnnoteEl) {
selectCodeLines(selectedAnnoteEl);
}
}, 10)
);
function throttle(fn, ms) {
let throttle = false;
let timer;
return (...args) => {
if(!throttle) { // first call gets through
fn.apply(this, args);
throttle = true;
} else { // all the others get throttled
if(timer) clearTimeout(timer); // cancel #2
timer = setTimeout(() => {
fn.apply(this, args);
timer = throttle = false;
}, ms);
}
};
}
// Attach click handler to the DT
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
for (const annoteDlNode of annoteDls) {
annoteDlNode.addEventListener('click', (event) => {
const clickedEl = event.target;
if (clickedEl !== selectedAnnoteEl) {
unselectCodeLines();
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
if (activeEl) {
activeEl.classList.remove('code-annotation-active');
}
selectCodeLines(clickedEl);
clickedEl.classList.add('code-annotation-active');
} else {
// Unselect the line
unselectCodeLines();
clickedEl.classList.remove('code-annotation-active');
}
});
}
const findCites = (el) => {
const parentEl = el.parentElement;
if (parentEl) {
const cites = parentEl.dataset.cites;
if (cites) {
return {
el,
cites: cites.split(' ')
};
} else {
return findCites(el.parentElement)
}
} else {
return undefined;
}
};
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
for (var i=0; i<bibliorefs.length; i++) {
const ref = bibliorefs[i];
const citeInfo = findCites(ref);
if (citeInfo) {
tippyHover(citeInfo.el, function() {
var popup = window.document.createElement('div');
citeInfo.cites.forEach(function(cite) {
var citeDiv = window.document.createElement('div');
citeDiv.classList.add('hanging-indent');
citeDiv.classList.add('csl-entry');
var biblioDiv = window.document.getElementById('ref-' + cite);
if (biblioDiv) {
citeDiv.innerHTML = biblioDiv.innerHTML;
}
popup.appendChild(citeDiv);
});
return popup.innerHTML;
});
}
}
});
</script>
</div> <!-- /content -->
</body></html>