Image-ST/modules.json at main · cellgeni/Image-ST · GitHub

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{
  "name": "",
  "homePage": "",
  "repos": {
    "https://github.com/cellgeni/nf-modules.git": {
      "modules": {
        "sanger-cellgeni": {
          "imaging/cellpose": {
            "branch": "main",
            "git_sha": "af522da819006c943b90c662ae727c112abefea7",
            "installed_by": ["tiled_segmentation"]
          },
          "imaging/concatenatewkts": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_spotiflow"]
          },
          "imaging/deepcell": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_segmentation"]
          },
          "imaging/extractpeakprofile": {
            "branch": "main",
            "git_sha": "e2ae84ad941150bd063e0a35af80eaa9d3cf9d22",
            "installed_by": ["modules"]
          },
          "imaging/generatetiles": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_segmentation", "tiled_spotiflow"]
          },
          "imaging/instanseg": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_segmentation"]
          },
          "imaging/mergeoutlines": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_segmentation"]
          },
          "imaging/mergepeaks": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_spotiflow"]
          },
          "imaging/microaligner": {
            "branch": "main",
            "git_sha": "dbed639cc5fc21e568581b172aa3d3476f6074f4",
            "installed_by": ["microaligner_registration"]
          },
          "imaging/postcode": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["modules"]
          },
          "imaging/stardist": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_segmentation"]
          },
          "imaging/tiledspotiflow": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["tiled_spotiflow"]
          },
          "spatial/generatevitessceconfig": {
            "branch": "develop",
            "git_sha": "faa1776813ed9353cd17675bb7757eb268ab7311",
            "installed_by": ["modules"]
          }
        }
      },
      "subworkflows": {
        "sanger-cellgeni": {
          "microaligner_registration": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["subworkflows"]
          },
          "tiled_segmentation": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["subworkflows"]
          },
          "tiled_spotiflow": {
            "branch": "main",
            "git_sha": "16d631eb9cd8180d6381c609374fbf3f52f4dfda",
            "installed_by": ["subworkflows"]
          }
        }
      }
    }
  }
}