Hello,
Thank you very much for the framework you created. We are planning to use it to assess the effects of normalization methods in downstream analysis of scATAC-Seq data.
We are wondering whether a peak-by-cell matrix could also be used as input. Are there any drawbacks to using a peak matrix instead of a window matrix?
Hello,
Thank you very much for the framework you created. We are planning to use it to assess the effects of normalization methods in downstream analysis of scATAC-Seq data.
We are wondering whether a peak-by-cell matrix could also be used as input. Are there any drawbacks to using a peak matrix instead of a window matrix?