---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Input In [38], in <cell line: 1>()
----> 1 adata = QCPipe.qc.read_dropest("raw_matrix")
File ~/pipseq/qc_utils.py:29, in read_dropest(dir_path, reorder)
27 adata.obs.index.name = 'Cells'
28 adata.var.index.name = 'Genes'
---> 29 adata = reorder_AnnData(adata,descending=True)
30 adata.raw = adata
31 return(adata)
File ~/pipseq/qc_utils.py:13, in reorder_AnnData(AnnData, descending)
11 AnnData.obs['total_counts'] = AnnData.X.sum(axis=1)
12 if(descending==True):
---> 13 AnnData = AnnData[np.argsort(AnnData.obs['total_counts'])[::-1]].copy()
14 AnnData.uns['Order'] = 'Descending'
15 elif(descending==False):
File <__array_function__ internals>:180, in argsort(*args, **kwargs)
File ~/.local/lib/python3.9/site-packages/numpy/core/fromnumeric.py:1120, in argsort(a, axis, kind, order)
1012 @array_function_dispatch(_argsort_dispatcher)
1013 def argsort(a, axis=-1, kind=None, order=None):
1014 """
1015 Returns the indices that would sort an array.
1016
(...)
1118
1119 """
-> 1120 return _wrapfunc(a, 'argsort', axis=axis, kind=kind, order=order)
File ~/.local/lib/python3.9/site-packages/numpy/core/fromnumeric.py:57, in _wrapfunc(obj, method, *args, **kwds)
54 return _wrapit(obj, method, *args, **kwds)
56 try:
---> 57 return bound(*args, **kwds)
58 except TypeError:
59 # A TypeError occurs if the object does have such a method in its
60 # class, but its signature is not identical to that of NumPy's. This
(...)
64 # Call _wrapit from within the except clause to ensure a potential
65 # exception has a traceback chain.
66 return _wrapit(obj, method, *args, **kwds)
File ~/.local/lib/python3.9/site-packages/pandas/core/series.py:3667, in Series.argsort(self, axis, kind, order)
3663 return self._constructor(result, index=self.index).__finalize__(
3664 self, method="argsort"
3665 )
3666 else:
-> 3667 return self._constructor(
3668 np.argsort(values, kind=kind), index=self.index, dtype="int64"
3669 ).__finalize__(self, method="argsort")
File ~/.local/lib/python3.9/site-packages/pandas/core/series.py:430, in Series.__init__(self, data, index, dtype, name, copy, fastpath)
428 index = ibase.default_index(len(data))
429 elif is_list_like(data):
--> 430 com.require_length_match(data, index)
432 # create/copy the manager
433 if isinstance(data, (SingleBlockManager, SingleArrayManager)):
File ~/.local/lib/python3.9/site-packages/pandas/core/common.py:531, in require_length_match(data, index)
527 """
528 Check the length of data matches the length of the index.
529 """
530 if len(data) != len(index):
--> 531 raise ValueError(
532 "Length of values "
533 f"({len(data)}) "
534 "does not match length of index "
535 f"({len(index)})"
536 )
ValueError: Length of values (1) does not match length of index (404099)
