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ribiosGraph 1.1.0

  • Initial CRAN submission
  • Package prepared for CRAN submission with comprehensive documentation
  • Depends on ribiosUtils (on CRAN) and igraph

ribiosGraph 1.0.11 (2013-06-05)

  • Add TextMining_I2E and manual as supported databases

ribiosGraph 1.0.10 (2013-03-27)

  • Add aux function fixNodeLabel to fix dash-only gene labels

ribiosGraph 1.0.9 (2013-03-22)

  • Add ronet-evaluation.Rscript for internal evaluation
  • Bit-flags can specify which databases to use

ribiosGraph 1.0.8 (2012-12-04)

  • ronet.Rscript: bug fix for input GeneID/GeneSymbols trimming

ribiosGraph 1.0.7 (2012-12-03)

  • ronet.Rscript: add "-genesymbol" option
  • Output graph converts GeneIDs to GeneSymbols

ribiosGraph 1.0.6 (2012-11-30)

  • exportGML: fixed node indices starting from 0 instead of 1

ribiosGraph 1.0.5 (2012-07-30)

  • ronet.Rscript: package namespace "graph" appended before edges function

ribiosGraph 1.0.4 (2012-07-11)

  • Add pathSigTree.Rscript for pathway signature tree visualization

ribiosGraph 1.0.3 (2012-04-12)

  • exportGML refactored into ribiosNetwork package

ribiosGraph 1.0.2 (2012-04-11)

  • ronet.Rscript: output isInput attribute of nodes

ribiosGraph 1.0.1 (2012-03-27)

  • ronet.Rscript: support edge type and automatic output format recognition

ribiosGraph 1.0.0 (2012-03-26)

  • Initial release of ribiosGraph (originally ribiosNetwork)
  • Add ronet.Rscript and testing files