mkdocs.yml

site_name: antiSMASH Documentation
repo_url: https://github.com/antismash/documentation
site_author: antiSMASH developers
nav:
    - Home: index.md
    - Using antiSMASH:
      - Introduction: intro.md
      - Submitting jobs on the website: website_submission.md
      - Understanding the output:
        - Region concept: understanding_output/regions.md
        - Overview page: understanding_output/overview.md
        - Results page: understanding_output/results.md
      - Loading external results: sideloading.md
      - FAQ: faq.md
      - Common issues: common_issues.md
      - Glossary of protocluster types: glossary.md
      - About: about.md
    - Module-specific information:
       - BGC detection: clusterrules.md
       - ClusterBlast: modules/clusterblast.md
       - Cluster Compare: modules/cluster_compare.md
       - CompaRiPPson: modules/comparippson.md
       - NRPS/PKS domains: modules/nrps_pks_domains.md
       - NRPS/PKS modules: modules/nrps_pks_modules.md
       - PKS type II: modules/t2pks.md
       - TFBS Finder: modules/tfbs.md
    - Local antiSMASH installation:
        - Installation: install.md
        - Starting command line runs: command_line.md
    - Change log:
        - 8.0: changelog/8.0.md
        - 7.1: changelog/7.1.md
        - 7.0: changelog/7.0.md
        - 6.1: changelog/6.1.md
        - 6.0: changelog/6.0.md
        - 5.2: changelog/5.2.md
        - 5.1: changelog/5.1.md
theme:
    name: readthedocs
    custom_dir: custom_theme
markdown_extensions:
    - footnotes
    - toc:
        permalink: "#"
plugins:
  - search
  - git-revision-date
extra_css:
  - css/extra.css