Run on schedule and build preview HTML

Author: fxwiegand

.github/workflows/build_and_deploy.yml

@@ -1,6 +1,8 @@
 name: build-and-deploy
 
 on:
+  schedule:
+    - cron: '0 18 * * *'
   push:
     branches:
       - main
@@ -23,6 +25,21 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+
+      - name: Install alignoth
+        run: cargo install alignoth
+
+      - name: Checkout alignoth repo
+        uses: actions/checkout@v4
+        with:
+          repository: alignoth/alignoth
+          path: alignoth
+
+      - name: Build preview html
+        run: alignoth -b alignoth/tests/sample_3/NA12878.bam -r alignoth/tests/sample_3/ref.fa -g 1:250-500 --html --max-read-depth 40 > src/preview.html
 
       - name: locosopa
         uses: koesterlab/locosopa@main