gateways18/docker-compose.yml at master · agavetraining/gateways18 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
version: '2'

volumes:
  training-volume:
  ssh-keygen-volume:
  jenkins-home-volume:

services:

  # traefik reverse proxy to expose the jupyter and jenkins servers over ssl via a common hostname
  traefik:
    image: traefik:latest
    mem_limit: 512m
    command: --debug=True --docker --docker.watch --web --web.address=:28443 --entryPoints='Name:http Address::80 --entryPoints='Name:https Address::443 --defaultEntryPoints='http,https'
    ports:
      - '443:443'
      - '80:80'
      - '28443:28443'
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock

  # This is a single shot container that creates a set of ssh keys per instance
  # and deploys them to a persistent volume shared between the sandbox and
  # jupyter container. By doing this, we don't need to ship keys with the image
  # or source.
  ssh-keygen:
    image: agaveplatform/rstudio:3.4.3-shiny
    entrypoint: /bin/bash
    command: /usr/local/bin/ssh-keygen/keygen.sh
    environment:
      - "ROOT=TRUE"
      - "USER=${AGAVE_USERNAME}"
      - "PASSWORD=${AGAVE_PASSWORD}"
      - "AGAVE_USERNAME=${AGAVE_USERNAME}"
      - "AGAVE_PASSWORD=${AGAVE_PASSWORD}"
      - "AGAVE_TENANT=${AGAVE_TENANT}"
      - "AGAVE_CACHE_DIR=/home/${AGAVE_USERNAME}/work/.agave"
      - "S6_KEEP_ENV=1"
    env_file:
      - training.env
    volumes:
      - "ssh-keygen-volume:/home/${AGAVE_USERNAME}/.ssh"
      - "./docker/ssh-keygen:/usr/local/bin/ssh-keygen"
    labels:
      - "traefik.enable=false"

  rstudio:
    build:
      context: .
      dockerfile: docker/rstudio/Dockerfile
    image: agaveplatform/rstudio:3.4.3-shiny
    mem_limit: 2048m
    restart: on-failure
    ports:
      - '8787:8787'
      - '9100:9100'
      - '9101:9101'
      - '9102:9102'
      - '9103:9103'
      - '9200:9200'
    depends_on:
      - ssh-keygen
    env_file:
      - training.env
    environment:
      - "ROOT=TRUE"
      - "USER=${AGAVE_USERNAME}"
      - "PASSWORD=${AGAVE_PASSWORD}"
      - "AGAVE_CACHE_DIR=/home/${AGAVE_USERNAME}/work/.agave"
      - "AGAVE_TENANT_BASE_URL=https://sandbox.agaveplatform.org"
      - "AGAVE_BASE_URL=https://sandbox.agaveplatform.org"
      - "S6_KEEP_ENV=1"
      - "SHINY_CONNECT_USERNAME=${SHINY_CONNECT_USERNAME}"
      - "SHINY_CONNECT_TOKEN=${SHINY_CONNECT_TOKEN}"
      - "SHINY_CONNECT_SECRET=${SHINY_CONNECT_SECRET}"
    volumes:
      - "ssh-keygen-volume:/home/$AGAVE_USERNAME/.ssh"
      - "training-volume:/home/$AGAVE_USERNAME/work"
      - ".:/home/$AGAVE_USERNAME/notebooks"
      - "./INSTALL.Rmd:/home/$AGAVE_USERNAME/INSTALL.Rmd"
    labels:
      - "traefik.enable=true"
      - "traefik.port=8787"
      - "traefik.protocol=http"
      - "traefik.tags=$AGAVE_USERNAME,rstudio"
      - "traefik.backend=$AGAVE_USERNAME-training-rstudio"
      - "traefik.frontend.rule=PathPrefix:/"

  plumber:
    build:
      context: .
      dockerfile: docker/plumber/Dockerfile
    image: agaveplatform/plumber
    restart: on-failure
    ports:
      - '9300:9300'
    mem_limit: 2048m
    env_file:
      - training.env
    labels:
      - "traefik.enable=true"
      - "traefik.port=9300"
      - "traefik.protocol=http"
      - "traefik.tags=$AGAVE_USERNAME,plumber"
      - "traefik.backend=$AGAVE_USERNAME-training-plumber"
      - "traefik.frontend.rule=PathPrefix:/plumber"
    volumes:
      - ./plumber:/usr/local/agavetraining/examples

  sandbox:
    image: agaveplatform/training-sandbox:latest
    mem_limit: 2048m
    privileged: True
    restart: on-failure
    ports:
      - '10022:22'
    depends_on:
      - ssh-keygen
    env_file:
      - training.env
    environment:
      - VM_MACHINE=$$ENVIRONMENT-node-$$AGAVE_USERNAME
    volumes:
      - ssh-keygen-volume:/home/jovyan/.ssh
      - training-volume:/home/jovyan/work
      - /var/run/docker.sock:/var/run/docker.sock
    labels:
      - "traefik.enable=false"

  opencpu:
    build:
      context: .
      dockerfile: docker/opencpu/Dockerfile
    image: agaveplatform/opencpu:latest
    mem_limit: 1024m
    restart: on-failure
    ports:
      - '8004:8004'
    depends_on:
      - ssh-keygen
    env_file:
      - training.env
    environment:
      - "AGAVE_TENANT_BASE_URL=https://sandbox.agaveplatform.org"
      - "AGAVE_BASE_URL=https://sandbox.agaveplatform.org"
      - "BOOTSTRAP_AGAVE_CLIENT=1"
    volumes:
      - training-volume:/home/opencpu/work
#      - "./opencpu/tutorial:/home/opencpu/tutorial"
    labels:
      - "traefik.enable=true"
      - "traefik.port=8004"
      - "traefik.protocol=http"
      - "traefik.tags=$AGAVE_USERNAME,opencpu"
      - "traefik.backend=$AGAVE_USERNAME-training-opencpu"
      - "traefik.frontend.rule=PathPrefix:/ocpu"


#  jenkins:
#    build:
#      context: jenkins
#      dockerfile: Dockerfile
#    image: agaveplatform/jenkins:sc18
#    mem_limit: 2048m
#    privileged: True
#    restart: on-failure
#    ports:
#      - '8080:8080'
#      - '8443:8443'
#    depends_on:
#      - ssh-keygen
#    env_file:
#      - training.env
#    environment:
#      - AGAVE_CACHE_DIR=/var/jenkins_home/.$AGAVE_TENANT
##      - JENKINS_OPTS="--prefix=/jenkins "
#    volumes:
#      - ssh-keygen-volume:/var/jenkins_home/.ssh
##      - jenkins-home-volume:/var/jenkins_home
#    labels:
#      - "traefik.port=8080"
#      - "traefik.protocol=http"
#      - "traefik.tags=jenkins"
#      - "traefik.backend=jenkins"
#      - "traefik.frontend.rule=PathPrefix:/jenkins"
#      - "traefik.frontend.passHostHeader=true"