From 7c35b41cbbedab3721fae45053136a6c299fd7da Mon Sep 17 00:00:00 2001 From: Dhananjhay Date: Tue, 24 Feb 2026 09:38:57 -0500 Subject: [PATCH 1/4] change participant label from 001 to 002 --- Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 88ab00e..c18a95c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -17,11 +17,11 @@ RUN set -e && \ mamba create -y -n snakebids-env -c conda-forge -c bioconda snakebids unzip && \ source /opt/conda/etc/profile.d/conda.sh && \ conda activate snakebids-env && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ ./autoafids/run.py test_data/bids_T2w test_out participant --modality T2w --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ ./autoafids/run.py test_data/bids_ct test_out participant --modality ct --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --stereotaxy STN --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --fidqc --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --stereotaxy STN --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --fidqc --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ conda clean --all -y && \ rm -rf /opt/conda/pkgs /root/.caches From 963ea33786520f3b13760dde6ee056bae8b05de9 Mon Sep 17 00:00:00 2001 From: Dhananjhay Date: Tue, 24 Feb 2026 09:41:52 -0500 Subject: [PATCH 2/4] pin python version when building and uploading conda package --- .github/workflows/push_conda.yml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.github/workflows/push_conda.yml b/.github/workflows/push_conda.yml index e0a964e..0758915 100644 --- a/.github/workflows/push_conda.yml +++ b/.github/workflows/push_conda.yml @@ -4,8 +4,8 @@ name: Build and Upload Conda Package on: push: branches: [main] - # pull_request: - # types: [opened, synchronize, reopened] + pull_request: + types: [opened, synchronize, reopened] workflow_dispatch: jobs: build-and-upload: @@ -29,6 +29,7 @@ jobs: use-mamba: true conda-solver: libmamba auto-activate-base: true + python-version: 3.11 - name: Install dependencies run: | mamba install -y -c conda-forge conda-build anaconda-client boa From 6b6f1f258dd7d0f0713d91ae298d5ea46854408f Mon Sep 17 00:00:00 2001 From: Dhananjhay Date: Tue, 24 Feb 2026 09:46:31 -0500 Subject: [PATCH 3/4] pin python in the mamba install step --- .github/workflows/push_conda.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/push_conda.yml b/.github/workflows/push_conda.yml index 0758915..8680091 100644 --- a/.github/workflows/push_conda.yml +++ b/.github/workflows/push_conda.yml @@ -29,10 +29,9 @@ jobs: use-mamba: true conda-solver: libmamba auto-activate-base: true - python-version: 3.11 - name: Install dependencies run: | - mamba install -y -c conda-forge conda-build anaconda-client boa + mamba install -y -c conda-forge conda-build anaconda-client boa python=3.11 - name: Get latest commit SHA from main id: get_sha run: | From 68c4bbc3cd496ec9ce9199d073cb57a959805c1b Mon Sep 17 00:00:00 2001 From: Dhananjhay Date: Tue, 24 Feb 2026 09:53:23 -0500 Subject: [PATCH 4/4] stop building and uploading conda package on PRs --- .github/workflows/push_conda.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/push_conda.yml b/.github/workflows/push_conda.yml index 8680091..8993ea7 100644 --- a/.github/workflows/push_conda.yml +++ b/.github/workflows/push_conda.yml @@ -4,8 +4,8 @@ name: Build and Upload Conda Package on: push: branches: [main] - pull_request: - types: [opened, synchronize, reopened] + # pull_request: + # types: [opened, synchronize, reopened] workflow_dispatch: jobs: build-and-upload: