VirtualCellModel/Makefile.analysis at master · afarnudi/VirtualCellModel · GitHub

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TARGET=VCM_Analysis
CXXFLAGS=-std=c++14 -O2

OpenMM_INSTALL_DIR=/scratch/alifarnudi/local/openmm
#OpenMM_INSTALL_DIR=/usr/local/openmm

OSNAME := $(shell uname -s)

Boost_LIB_Mac_Dir = /usr/local/lib
Boost_LIB_Lin_Dir = /usr/lib/x86_64-linux-gnu

MacLIBS= -lOpenMM -lboost_filesystem
LinLIBS= -lOpenMM -lboost_filesystem -lboost_system

ifeq ($(OSNAME),Darwin)
  Boost_LIB_Dir = $(Boost_LIB_Mac_Dir)
  LIBS = $(MacLIBS)
  CXX = g++
else
  Boost_LIB_Dir = $(Boost_LIB_Mac_Dir)
  LIBS = $(LinLIBS)
  CXX = clang++
endif

BINDIR=bin
SRCDIR=source
INCDIR=include
OBJDIR=objects


INCDIRS=-I$(INCDIR) -I$(OpenMM_INSTALL_DIR)/include
LIB_DIR=-L$(OpenMM_INSTALL_DIR)/lib

SRCFILES=$(wildcard $(SRCDIR)/main_Analysis.cpp) $(wildcard $(SRCDIR)/Membrane/*.cpp) $(wildcard $(SRCDIR)/Chromatin/*.cpp) $(wildcard $(SRCDIR)/Actin/*.cpp) $(wildcard $(SRCDIR)/ECM/*.cpp) $(wildcard $(SRCDIR)/Membrane_Actin/*.cpp) $(wildcard $(SRCDIR)/OpenMM/*.cpp) $(wildcard $(SRCDIR)/Genfuncs/*.cpp)
OBJFILES=$(patsubst $(SRCDIR)/%.cpp,$(OBJDIR)/%.o,$(SRCFILES))
DEPFILES=$(wildcard $(INCDIR)/*.hpp) $(wildcard $(INCDIR)/*.h)


INC=-I$(DEPFILES)

all: $(BINDIR)/$(TARGET)
	@echo Finished!
	@echo
	@echo Don\'t forget to export OpenMM\'s Dynamic Library before running the executable.
	@echo Default paths are:
	@echo     Mac: export DYLD_LIBRARY_PATH=/usr/local/openmm/lib
	@echo     Lin: export LD_LIBRARY_PATH=/usr/local/openmm/lib
	@echo

$(BINDIR)/$(TARGET): $(OBJFILES)
	@$(CXX) $(CXXFLAGS) $(LIB_DIR) $(LIBS) $? -o $@

$(OBJDIR)/%.o: $(SRCDIR)/%.cpp
	@mkdir -p $(@D)
	$(CXX) $(CXXFLAGS) $(INCDIRS) -c $< -o $@

SUBDIR_ROOTS := objects
DIRS := . $(shell find $(SUBDIR_ROOTS) -type d)
GARBAGE_PATTERNS := *.o
GARBAGE := $(foreach DIR,$(DIRS),$(addprefix $(DIR)/,$(GARBAGE_PATTERNS)))

clean:
	rm -rf $(GARBAGE)