RESearch/fast.xml at master · TheRobotCarlson/RESearch · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>blastn</BlastOutput_program>
  <BlastOutput_version>BLASTN 2.7.1+</BlastOutput_version>
  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
  <BlastOutput_db>databases</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>No definition line</BlastOutput_query-def>
  <BlastOutput_query-len>10</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_expect>10</Parameters_expect>
      <Parameters_sc-match>1</Parameters_sc-match>
      <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
      <Parameters_gap-open>5</Parameters_gap-open>
      <Parameters_gap-extend>2</Parameters_gap-extend>
      <Parameters_filter>L;m;</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
  <Iteration_iter-num>1</Iteration_iter-num>
  <Iteration_query-ID>Query_1</Iteration_query-ID>
  <Iteration_query-def>No definition line</Iteration_query-def>
  <Iteration_query-len>10</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YFR019W_AWRI1631</Hit_id>
  <Hit_def>FAB1 ORF Verified [Sc strain AWRI1631] 1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis</Hit_def>
  <Hit_accession>YFR019W_AWRI1631</Hit_accession>
  <Hit_len>6816</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>20.3164</Hsp_bit-score>
      <Hsp_score>10</Hsp_score>
      <Hsp_evalue>8.16426</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>10</Hsp_query-to>
      <Hsp_hit-from>4934</Hsp_hit-from>
      <Hsp_hit-to>4925</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>10</Hsp_identity>
      <Hsp_positive>10</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>10</Hsp_align-len>
      <Hsp_qseq>GTAGCTAGCT</Hsp_qseq>
      <Hsp_hseq>GTAGCTAGCT</Hsp_hseq>
      <Hsp_midline>||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YIL083C_AWRI1631</Hit_id>
  <Hit_def>CAB2 ORF Verified [Sc strain AWRI1631] Probable phosphopantothenoylcysteine synthetase (PPCS), which catalyzes the second step of coenzyme A biosynthesis from pantothenate; null mutant lethality is complemented by E. coli coaBC (encoding a bifunctional enzyme with PPCS activity)</Hit_def>
  <Hit_accession>YIL083C_AWRI1631</Hit_accession>
  <Hit_len>1098</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>20.3164</Hsp_bit-score>
      <Hsp_score>10</Hsp_score>
      <Hsp_evalue>8.16426</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>10</Hsp_query-to>
      <Hsp_hit-from>1091</Hsp_hit-from>
      <Hsp_hit-to>1082</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>10</Hsp_identity>
      <Hsp_positive>10</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>10</Hsp_align-len>
      <Hsp_qseq>GTAGCTAGCT</Hsp_qseq>
      <Hsp_hseq>GTAGCTAGCT</Hsp_hseq>
      <Hsp_midline>||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YHR111W_AWRI1631</Hit_id>
  <Hit_def>UBA4 ORF Verified [Sc strain AWRI1631] Protein that activates Urm1p before its conjugation to proteins (urmylation); also acts in thiolation of the wobble base of cytoplasmic tRNAs by adenylating and then thiolating Urm1p; receives sulfur from Tum1p</Hit_def>
  <Hit_accession>YHR111W_AWRI1631</Hit_accession>
  <Hit_len>1323</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>20.3164</Hsp_bit-score>
      <Hsp_score>10</Hsp_score>
      <Hsp_evalue>8.16426</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>10</Hsp_query-to>
      <Hsp_hit-from>1220</Hsp_hit-from>
      <Hsp_hit-to>1211</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>10</Hsp_identity>
      <Hsp_positive>10</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>10</Hsp_align-len>
      <Hsp_qseq>GTAGCTAGCT</Hsp_qseq>
      <Hsp_hseq>GTAGCTAGCT</Hsp_hseq>
      <Hsp_midline>||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>4747</Statistics_db-num>
      <Statistics_db-len>5368133</Statistics_db-len>
      <Statistics_hsp-len>8</Statistics_hsp-len>
      <Statistics_eff-space>10660314</Statistics_eff-space>
      <Statistics_kappa>0.710602795216363</Statistics_kappa>
      <Statistics_lambda>1.37406312246009</Statistics_lambda>
      <Statistics_entropy>1.30724660390929</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>