celltypist model file missing

[ssong01]

Hi,

celltypist model file only has a few options:

Can you provide celltypist model for 18 models similar to other methods?

[amandaoliver15]

Hi ssong01, thanks for raising this issue and your interest in the atlas. We made 7 Celltypist models that we thought would be the most useful to the community. The benefit of Celltypist is that you can annotate all your cells without separating into lineages, hence we didn't make 18 models that are analogous to our scANVI models.

If you are looking for a model that doesn't exist it's very easy to make a custom Celltypist model, just download our data on gutcellatlas.org and follow one of the Celltypist tutorials for making custom models.