CellViT-Inference/pyproject.toml at main · TIO-IKIM/CellViT-Inference · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
[build-system]
requires = ["setuptools", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "cellvit"
version = "1.0.9"
description = "CellViT Inference Pipeline for Whole Slide Images (WSI) in Memory"
authors = [
    { name = "Fabian Hörst", email = "fabian.hoerst@uk-essen.de" }
]
license = {text = "Apache 2.0 with common clause, see LICENSE"}
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Education",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Programming Language :: Python :: 3",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: POSIX :: Other",
]
readme = "docs/README-PyPI.md"
requires-python = ">=3.9"
dependencies = [
    "colorama",
    "colour",
    "einops>=0.6.1",
    "geojson>=2.0.0",
    "natsort",
    "numba>=0.58.0",
    "numpy<2.0.0",
    "opencv-python-headless==4.7.0.72",
    "opt-einsum>=3.3.0",
    "pandas",
    "pathopatch>=1.0.9",
    "pydantic>=1.10.16,<2.0",
    "pydicom==2.4.4",
    "ray[default]>=2.9.3",
    "scikit-image>=0.19.3,<0.27",
    "scipy>=1.8.0",
    "Shapely>=1.8.5.post1,<=2.0.5",
    "ujson==5.8.0",
    "python-snappy",
    "tqdm",
    "psutil",
    "pyaml"
]

[tool.setuptools]
packages = {find = {exclude = ["tests", "tests.*"]}}

[project.urls]
Homepage = "https://github.com/TIO-IKIM/CellViT-Inference"
Documentation = "https://tio-ikim.github.io/CellViT-Inference/"
License = "https://github.com/TIO-IKIM/CellViT-Inference/blob/main/LICENSE"

[project.scripts]
cellvit-inference = "cellvit.detect_cells:main"
cellvit-check = "cellvit.check_system:main"
cellvit-download-examples = "cellvit.utils.cache_test_database:cache_test_database"
cellvit-download-models = "cellvit.utils.cache_models:main"