colocboost/_pkgdown.yml at main · StatFunGen/colocboost · GitHub

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url: https://statfungen.github.io/colocboost

template:
  bootstrap: 5

navbar:
  left:
    - text: "News"
      href: articles/announcements.html
    - text: "Installation"
      href: articles/installation.html
    - text: "Tutorials"
      href: articles/index.html
    - text: "Functions"
      href: reference/index.html
  right:
    - icon: fa-github
      href: https://github.com/StatFunGen/colocboost

articles:
  - title: Performing Colocalization using ColocBoost
    desc: "Tutorials on how to perform multi-trait colocalization analysis using ColocBoost with flexible input data formats."
    contents:
    - Input_Data_Format
    - Individual_Level_Colocalization
    - Summary_Statistics_Colocalization
    - Disease_Prioritized_Colocalization

  - title: Interpretation and Visualization
    desc: "Tutorials on how to interpret and visualize the output from ColocBoost."
    contents:
    - Interpret_ColocBoost_Output
    - Visualization_ColocBoost_Output

  - title: Advanced Topics
    desc: "Advanced topics and special cases in colocalization and fine-mapping analysis."
    contents:
    - Partial_Overlap_Variants
    - ColocBoost_Update
    - ColocBoost_Wrapper_Pipeline
    - LD_Free_Colocalization
    - Ambiguous_Colocalization
    - FineBoost_Special_Case

  - title: internal
    contents:
    - announcements
    - installation
    - Pairwise_Colocalization

reference:
  - title: "Example Data"
    desc: "Example datasets for demonstration and testing."
    contents:
    - has_concept("colocboost_data")

  - title: "Model fitting"
    desc: "Main interface function for fitting multi-trait colocalization model."
    contents:
    - has_concept("colocboost")

  - title: "Inference and summary"
    desc: "Functions for inference and summary from fitted model."
    contents:
    - get_robust_colocalization
    - get_colocboost_summary
    - has_concept("colocboost_inference")

  - title: "Visualization"
    desc: "Functions for visualizing ColocBoost result."
    contents:
    - has_concept("colocboost_plot")

  - title: "Utilities"
    desc: "Helper functions and utilities"
    contents:
    - has_concept("colocboost_utilities")