Plasmidsaurus File Names

[lefebvam]

According to the Plasmidsaurus technical support:

• File names with “polished-reference” are contigs that utilize both ONT and Illumina data.
• File names with just “reference” are contigs that utilize ONT data only.
• For each isolate, the .fasta and .gbk files are in the main results folder, while the ONT-only .fna file is in the annotation subfolder.

For reference of the folder structure you can look here:
/nfs/turbo/umms-esnitkin/Project_MIDGE_Bac/Analysis/Plasmid_curing/Plasmidsaurus_data/SXQZ43_results/SXQZ43_1_KPC_418-A-1