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Fix defunct facet_grid(facets=) and flaky permutation test #6

Fix defunct facet_grid(facets=) and flaky permutation test

Fix defunct facet_grid(facets=) and flaky permutation test #6

Triggered via push March 13, 2026 23:51
Status Failure
Total duration 12m 44s
Artifacts 3

rworkflows.yml

on: push
Matrix: rworkflows
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[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773445928352,"y":2896.4375},{"x":1773445933350,"y":2917.828125},{"x":1773445938348,"y":2882.40625},{"x":1773445943352,"y":2876.984375},{"x":1773445948348,"y":2876.546875},{"x":1773445953347,"y":2845.421875},{"x":1773445958348,"y":2783.359375},{"x":1773445963353,"y":2905.4375},{"x":1773445968349,"y":2768.609375},{"x":1773445973352,"y":2877},{"x":1773445978348,"y":2586.25},{"x":1773445983350,"y":2899.09375},{"x":1773445988348,"y":2863.171875},{"x":1773445993348,"y":2903.890625},{"x":1773445998354,"y":1259.171875},{"x":1773446003348,"y":1551.171875},{"x":1773446008352,"y":1534.859375},{"x":1773446013347,"y":1777.921875},{"x":1773446018350,"y":1798.765625},{"x":1773446023348,"y":1802.453125},{"x":1773446028349,"y":1776.125},{"x":1773446033350,"y":1852.59375},{"x":1773446038350,"y":1870.234375},{"x":1773446043346,"y":1890.40625},{"x":1773446048348,"y":1896.484375},{"x":1773446053349,"y":1854.921875},{"x":1773446058349,"y":1859.765625},{"x":1773446063348,"y":1825.3125},{"x":1773446068348,"y":1852.125},{"x":1773446073348,"y":1628.515625},{"x":1773446078348,"y":1678},{"x":1773446083351,"y":1664.34375},{"x":1773446088350,"y":1656.421875},{"x":1773446093350,"y":1663.359375},{"x":1773446098349,"y":1707.734375},{"x":1773446103351,"y":1718.640625},{"x":1773446108348,"y":1721.609375},{"x":1773446113350,"y":1678.359375},{"x":1773446118347,"y":1755.65625},{"x":1773446123351,"y":1833.796875},{"x":1773446128348,"y":1769.328125},{"x":1773446133348,"y":1765.359375},{"x":1773446138348,"y":1792.84375},{"x":1773446143348,"y":1774.125},{"x":1773446148349,"y":1804.515625},{"x":1773446153348,"y":1780.703125},{"x":1773446158348,"y":1827.875},{"x":1773446163349,"y":1835.625},{"x":1773446168349,"y":1840.109375},{"x":1773446173348,"y":1838.265625},{"x":1773446178347,"y":1825.53125},{"x":1773446183348,"y":1826.53125},{"x":1773446188349,"y":1824.34375},{"x":1773446193348,"y":1837.90625},{"x":1773446198350,"y":1843.8125},{"x":1773446203347,"y":1857.8125},{"x":1773446208350,"y":1858.171875},{"x":1773446213353,"y":1870.515625},{"x":1773446218349,"y":1874.1875},{"x":1773446223350,"y":1878.359375},{"x":1773446228348,"y":1879.609375},{"x":1773446233348,"y":1805.578125},{"x":1773446238350,"y":1782.703125},{"x":1773446243349,"y":1788.03125},{"x":1773446248349,"y":1787.9375},{"x":1773446253348,"y":1774.4375},{"x":1773446258349,"y":1774.84375},{"x":1773446263352,"y":1776.53125},{"x":1773446268348,"y":1782.078125},{"x":1773446273348,"y":1346.9375},{"x":1773446278346,"y":1557.421875},{"x":1773446283349,"y":1685.09375},{"x":1773446288348,"y":1846.609375},{"x":1773446293354,"y":1889.890625},{"x":1773446298350,"y":1984.578125},{"x":1773446303358,"y":2145.375},{"x":1773446308348,"y":2156.8125},{"x":1773446313349,"y":2151.75},{"x":1773446318348,"y":2350.796875},{"x":1773446323352,"y":2195.875},{"x":1773446328350,"y":2230.671875},{"x":1773446333346,"y":2350.46875},{"x":1773446338353,"y":2823.40625},{"x":1773446343347,"y":2468.734375},{"x":1773446348349,"y":2356.625},{"x":1773446353347,"y":2636.859375},{"x":1773446358364,"y":2175.171875},{"x":1773446363347,"y":2426.15625},{"x":1773446368348,"y":2153.421875},{"x":1773446373348,"y":2281.921875},{"x":1773446378348,"y":2329.09375},{"x":1773446383348,"y":2313.0625},{"x":1773446388348,"y":2288.5625},{"x":1773446393349,"y":2276.109375},{"x":1773446398348,"y":2212.140625},{"x":1773446403350,"y":2254.75},{"x":1773446408348,"y":2216.515625},{"x":1773446413350,"y":2384.375},{"x":1773446418348,"y":2430.734375},{"x":1773446423349,"y":2467.15625},{"x":1773446428350,"y":2502.296875},{"x":1773446433349,"y":2522.546875},{"x":1773446438349,"y":2724.625},{"x":1773446443349,"y":2707.90625},{"x":1773446448349,"y":2663.375},{"x":1773446453348,"y":2615.03125},{"x":1773446458350,"y":2425.578125},{"x":1773446463355,"y":2741.5625},{"x":1773446468349,"y":2694.3125},{"x":1773446473349,"y":2378.875},{"x":1773446478351,"y"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773445928352,"y":13.310328886083694},{"x":1773445933350,"y":44.02935290193462},{"x":1773445938348,"y":42.16467463479416},{"x":1773445943352,"y":41.5994623655914},{"x":1773445948348,"y":39.06976744186046},{"x":1773445953347,"y":58.59531772575251},{"x":1773445958348,"y":55.07343124165555},{"x":1773445963353,"y":59.46488294314381},{"x":1773445968349,"y":25.233644859813083},{"x":1773445973352,"y":20.253164556962027},{"x":1773445978348,"y":23.994638069705093},{"x":1773445983350,"y":36.41851106639839},{"x":1773445988348,"y":27.418278852568378},{"x":1773445993348,"y":28.714859437751006},{"x":1773445998354,"y":26.897470039946736},{"x":1773446003348,"y":16.098864395457582},{"x":1773446008352,"y":18.908122503328894},{"x":1773446013347,"y":15.39491298527443},{"x":1773446018350,"y":34.57199734571997},{"x":1773446023348,"y":26.920507682030724},{"x":1773446028349,"y":28.390113560454246},{"x":1773446033350,"y":20.066889632107024},{"x":1773446038350,"y":17.17914438502674},{"x":1773446043346,"y":8.675184936112979},{"x":1773446048348,"y":11.879194630872483},{"x":1773446053349,"y":14.552736982643525},{"x":1773446058349,"y":12.784471218206159},{"x":1773446063348,"y":16.176470588235293},{"x":1773446068348,"y":14.468371467025573},{"x":1773446073348,"y":15.106951871657753},{"x":1773446078348,"y":21.845949535192563},{"x":1773446083351,"y":22.34185733512786},{"x":1773446088350,"y":10.386151797603196},{"x":1773446093350,"y":15.912117177097205},{"x":1773446098349,"y":32.286096256684495},{"x":1773446103351,"y":30.166112956810633},{"x":1773446108348,"y":29.764309764309765},{"x":1773446113350,"y":23.799999999999997},{"x":1773446118347,"y":24.666666666666668},{"x":1773446123351,"y":31.663326653306612},{"x":1773446128348,"y":25.13368983957219},{"x":1773446133348,"y":30.655957161981256},{"x":1773446138348,"y":30.206254158349964},{"x":1773446143348,"y":13.368983957219251},{"x":1773446148349,"y":12.875250166777851},{"x":1773446153348,"y":24.347826086956523},{"x":1773446158348,"y":24.117255163224517},{"x":1773446163349,"y":9.121395036887995},{"x":1773446168349,"y":10.134228187919463},{"x":1773446173348,"y":5.641370047011417},{"x":1773446178347,"y":4.496644295302014},{"x":1773446183348,"y":7.583892617449664},{"x":1773446188349,"y":4.953145917001338},{"x":1773446193348,"y":8.847184986595174},{"x":1773446198350,"y":8.678237650200266},{"x":1773446203347,"y":7.526881720430108},{"x":1773446208350,"y":5.093833780160858},{"x":1773446213353,"y":7.908847184986595},{"x":1773446218349,"y":5.174731182795699},{"x":1773446223350,"y":8.590604026845638},{"x":1773446228348,"y":5.298457411133468},{"x":1773446233348,"y":7.434695244474213},{"x":1773446238350,"y":20.066889632107024},{"x":1773446243349,"y":5.78345662407532},{"x":1773446248349,"y":6.693440428380187},{"x":1773446253348,"y":5.518169582772544},{"x":1773446258349,"y":6.648757555406314},{"x":1773446263352,"y":5.2069425901201605},{"x":1773446268348,"y":8.097165991902834},{"x":1773446273348,"y":11.682242990654206},{"x":1773446278346,"y":13.203753351206435},{"x":1773446283349,"y":15.620827770360481},{"x":1773446288348,"y":19.839142091152816},{"x":1773446293354,"y":20.427236315086784},{"x":1773446298350,"y":20.650730411686588},{"x":1773446303358,"y":20.80267558528428},{"x":1773446308348,"y":12.032085561497325},{"x":1773446313349,"y":22.587131367292226},{"x":1773446318348,"y":23.59625668449198},{"x":1773446323352,"y":13.346613545816732},{"x":1773446328350,"y":13.605898123324398},{"x":1773446333346,"y":30.053547523427042},{"x":1773446338353,"y":31.89940436796823},{"x":1773446343347,"y":53.72233400402414},{"x":1773446348349,"y":67.11140760507006},{"x":1773446353347,"y":67.48670212765957},{"x":1773446358364,"y":52.12201591511937},{"x":1773446363347,"y":57.594086021505376},{"x":1773446368348,"y":47.36138944555778},{"x":1773446373348,"y":45.26034712950601},{"x":1773446378348,"y":42.89526350900601},{"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
R CMD check found ERRORs
macOS-latest (auto)
Packages suggested but not available: 'XGR', 'haploR'
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
Process completed with exit code 1.
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
file 'echoconda/configure' did not have execute permissions: corrected
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh37’
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
macOS-latest (auto)
replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘SNPlocs.Hsapiens.dbSNP144.GRCh38’
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-auto-results
4.26 MB
sha256:fbb649793f8d74a4a99ac6987c63045e074d64eaf61c86bcc1cba3048c81ae71
Windows-biocversion-release-r-auto-results
4.3 MB
sha256:f9bf9789cd3cd7cfeda76534aeb24a0bc70acb44bf56a9728c59dcc9f9fb7f4b
macOS-biocversion-release-r-auto-results
4.29 MB
sha256:05778e456fa8c04a452b89bbff5ea58f1a7e39e9b49bd7dd92eb7dd2d4b2da8e