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main.py
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import logging
from scystream.sdk.core import entrypoint
from scystream.sdk.database_handling.database_manager import (
PandasDatabaseOperations,
)
from scystream.sdk.env.settings import (
EnvSettings,
InputSettings,
OutputSettings,
DatabaseSettings,
)
from algorithms.lda import LDAModeler
from algorithms.models import PreprocessedDocument
from algorithms.vectorizer import NLPVectorizer
from algorithms.explanations import TopicExplainer
logging.basicConfig(
level=logging.INFO,
format="%(asctime)s - %(name)s - %(levelname)s - %(message)s",
)
logger = logging.getLogger(__name__)
class PreprocessedDocuments(DatabaseSettings, InputSettings):
__identifier__ = "preprocessed_docs"
class DocTopicOutput(DatabaseSettings, OutputSettings):
__identifier__ = "docs_to_topics"
class TopicTermsOutput(DatabaseSettings, OutputSettings):
__identifier__ = "top_terms_per_topic"
class LDATopicModeling(EnvSettings):
N_TOPICS: int = 5
MAX_ITER: int = 10
LEARNING_METHOD: str = "batch"
N_TOP_WORDS: int = 10
preprocessed_docs: PreprocessedDocuments
doc_topic: DocTopicOutput
topic_term: TopicTermsOutput
class TopicTermsInput(DatabaseSettings, InputSettings):
__identifier__ = "topic_terms_input"
class QueryInformationInput(DatabaseSettings, InputSettings):
"""
Our TopicExplaination needs some kind of information about the actual
query executed,this query information includes the query and the source
Looking like: query, source, created_at
"""
__identifier__ = "query_information_input"
class ExplanationsOutput(DatabaseSettings, OutputSettings):
__identifier__ = "explanations_output"
class TopicExplanation(EnvSettings):
MODEL_NAME: str = "gpt-oss:120b"
OLLAMA_API_KEY: str = ""
topic_terms: TopicTermsInput
query_information: QueryInformationInput
explanations_output: ExplanationsOutput
def parse_pg_array(val):
if isinstance(val, str):
return val.strip("{}").split(",")
return val
@entrypoint(LDATopicModeling)
def lda_topic_modeling(settings):
logger.info("Starting LDA topic modeling pipeline…")
logger.info("Querying normalized docs from db...")
preprocessed_docs_db = PandasDatabaseOperations(
settings.preprocessed_docs.DB_DSN, settings.preprocessed_docs.DB_SCHEMA
)
normalized_docs = preprocessed_docs_db.read(
table=settings.preprocessed_docs.DB_TABLE
)
preprocessed_docs = [
PreprocessedDocument(
doc_id=row["doc_id"], tokens=parse_pg_array(row["tokens"])
)
for _, row in normalized_docs.iterrows()
]
vectorizer = NLPVectorizer(preprocessed_docs)
vectorizer.analyze_frequencies()
vocab = vectorizer.build_vocabulary()
dtm = vectorizer.build_dtm()
lda = LDAModeler(
dtm=dtm,
vocab=vocab,
doc_ids=vectorizer.doc_ids,
n_topics=settings.N_TOPICS,
max_iter=settings.MAX_ITER,
learning_method=settings.LEARNING_METHOD,
random_state=42,
n_top_words=settings.N_TOP_WORDS,
)
lda.fit()
doc_topics = lda.extract_doc_topics()
topic_terms = lda.extract_topic_terms()
# TODO: Use Spark Integration here
logging.info("Writing dataframes to db...")
doc_topic_db = PandasDatabaseOperations(
settings.doc_topic.DB_DSN, settings.doc_topic.DB_SCHEMA
)
topic_terms_db = PandasDatabaseOperations(
settings.topic_term.DB_DSN, settings.topic_term.DB_SCHEMA
)
doc_topic_db.write(
table=settings.doc_topic.DB_TABLE, data=doc_topics, mode="overwrite"
)
topic_terms_db.write(
table=settings.topic_term.DB_TABLE, data=topic_terms, mode="overwrite"
)
@entrypoint(TopicExplanation)
def topic_explanation(settings):
logger.info("Starting topic explaination...")
logging.info("Querying topic terms from db...")
topic_terms_db = PandasDatabaseOperations(
settings.topic_terms.DB_DSN, settings.topic_terms.DB_SCHEMA
)
topic_terms = topic_terms_db.read(table=settings.topic_terms.DB_TABLE)
logging.info("Querying query information from db...")
query_info_db = PandasDatabaseOperations(
settings.query_information.DB_DSN, settings.query_information.DB_SCHEMA
)
query_information = query_info_db.read(
table=settings.query_information.DB_TABLE
)
metadata = query_information.iloc[0]
explainer = TopicExplainer(
model_name=settings.MODEL_NAME, api_key=settings.OLLAMA_API_KEY
)
explanations = explainer.explain_topics(
topic_terms=topic_terms,
search_query=metadata["query"],
source=metadata["source"],
created_at=metadata["created_at"],
)
explainations_output_db = PandasDatabaseOperations(
settings.explanations_output.DB_DSN,
settings.explanations_output.DB_SCHEMA,
)
explainations_output_db.write(
table=settings.explanations_output.DB_TABLE,
data=explanations,
mode="overwrite",
)
logging.info("Topic explanation block finished.")