Small edit to step 5 (set-up)

[anastasia-lucas]

Hi. Thanks for the tutorial. It is great and easy to follow.

I had one problem with step 5. When I "Run" the image the container is not accessible. I needed to run a shell inside the container using docker run --rm -it pgkb/pharmcat-tutorial:latest sh instead of attaching via docker desktop. I am using Mac but thought it might possibly be related to this issue docker/for-win#13242. Just wanted to post in case others who are new to docker also have this issue.

[whaleyr]

@anastasia-lucas Can you link to which tutorial and which step 5 you're talking about? I want to make sure I'm looking at the same thing you are.

[whaleyr]

I actually think I see the underlying problem. Working on a fix

[whaleyr]

After looking into it, you're right. This is by-product of docker/for-win#13242 which I can reproduce on my own Apple Silicon mac. The long-term solution is to publish multi-platform builds of this tutorial. However, we're having problems with building the ARM image due to a different bug with R dependencies on ARM.

Will post again when this is fixed but your work-around is a good one for now. I'll get that integrated into the tutorial text.