pyproject.toml

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "code-indexer"
dynamic = ["version"]
description = "AI-powered semantic code search with local models"
authors = [
    {name = "Seba Battig", email = "jsbattig@gmail.com"}
]
readme = "README.md"
license = {text = "MIT"}
requires-python = ">=3.9"
keywords = ["ai", "code-search", "semantic-search", "ollama", "qdrant"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Environment :: Console",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Software Development",
    "Topic :: Text Processing :: Indexing",
]

dependencies = [
    "click>=8.0.0",
    "rich>=13.0.0",
    "httpx>=0.24.0",
    "pydantic>=2.0.0",
    "pyyaml>=6.0",
    "pathspec>=0.11.0",
    "watchdog>=3.0.0",
    "jsonschema>=4.0.0",
    "fastapi>=0.116.0",
    "uvicorn>=0.24.0",
    "python-jose[cryptography]>=3.3.0",
    "pwdlib[bcrypt]>=0.2.0",
    "python-multipart>=0.0.6",
    "psutil>=5.9.0,<6.0.0",
    "PyJWT>=2.8.0",
    "tokenizers>=0.13.0",
    "GitPython>=3.1.0",
    "zstandard>=0.25.0",
    # hnswlib is built from third_party/hnswlib submodule (Story #54)
    # DO NOT use PyPI hnswlib - it lacks check_integrity() method
    # Install: git submodule update --init && pip install -e .
    "regex>=2023.0.0",
    "rpyc>=6.0.0",
    "authlib>=1.6.5",
    "aiosqlite>=0.21.0",
    "aiohttp>=3.8.0",
    "msgpack>=1.0.0",
    "sse-starlette>=1.6.0",
    "itsdangerous>=2.1.0",
    "jinja2>=3.1.0",
    "msgpack>=1.0.0",
    "pysqlite3-binary>=0.5.0; sys_platform == 'linux'",
    "protobuf>=3.20.0",
    "cachetools>=5.0.0",
    "tenacity>=8.0.0",
    "tantivy==0.25.0",
    # OpenTelemetry dependencies (Story #695)
    "opentelemetry-api>=1.20.0",
    "opentelemetry-sdk>=1.20.0",
    "opentelemetry-exporter-otlp>=1.20.0",
    "opentelemetry-instrumentation-fastapi>=0.41b0",
    # Markdown rendering for Research Assistant
    "markdown>=3.4.0",
    "bleach>=6.0.0",
    # Wiki front matter parsing
    "python-frontmatter>=1.0.0",
    # MFA/TOTP dependencies (Epic #556)
    "pyotp>=2.9.0",
    "qrcode>=7.4.0",
    "pillow>=10.0.0",
]

[project.optional-dependencies]
cluster = [
    "psycopg[binary]>=3.1.0",
    "psycopg-pool>=3.1.0",
]
cohere = ["cohere>=5.0.0"]
dev = [
    "pytest>=7.0.0",
    "pytest-asyncio>=0.21.0",
    "pytest-cov>=4.0.0",
    "mypy>=1.0.0",
    "types-PyYAML>=6.0.0",
    "types-requests>=2.28.0",
    "black>=23.0.0",
    "ruff>=0.0.280",
    "pre-commit>=3.0.0",
]

[project.urls]
Homepage = "https://github.com/LightspeedDMS/code-indexer"
Repository = "https://github.com/LightspeedDMS/code-indexer"
Issues = "https://github.com/LightspeedDMS/code-indexer/issues"

[project.scripts]
code-indexer = "code_indexer.cli_fast_entry:main"
cidx = "code_indexer.cli_fast_entry:main"

[tool.hatch.build.targets.wheel]
packages = ["src/code_indexer"]
include = [
    "src/code_indexer/docker/*"
]
exclude = [
    "dist/docker-compose.yml"
]

[tool.hatch.version]
path = "src/code_indexer/__init__.py"

[tool.black]
line-length = 88
target-version = ["py39"]

[tool.ruff]
line-length = 88
target-version = "py39"
exclude = [
    "tests/fixtures/cidx-test-repo/",
    # Temporary exclusions for obsolete test files - need to be reviewed/updated
    "tests/unit/services/test_granular_state_callback_system.py",
    "tests/unit/progress/test_fix_validation_12_threads.py",
    "tests/unit/services/test_clean_file_chunking_manager.py",
    "tests/unit/services/test_safe_cancellation_strategy.py",
    "tests/unit/services/test_progress_callback_enhancements.py",
    "tests/unit/services/test_progress_display_surgical_fixes.py",
    "tests/unit/services/test_story_02_non_blocking_state_changes.py",
    "tests/unit/services/test_vector_calculation_manager.py",
    "tests/unit/services/test_progress_callback_integration.py",
    "tests/unit/services/test_parallel_processing_replacement.py",
    "tests/integration/services/test_story_02_parallel_file_processing.py",
    "tests/unit/services/test_voyage_threadpool_elimination.py",
    "tests/unit/services/test_file_chunking_manager_slot_integration.py",
    "tests/unit/progress/test_story_04_real_time_progress_calculations.py",
    "tests/unit/bugfixes/test_container_name_resolution_stop_services.py",
    "tests/manual/"
]

[tool.ruff.lint.per-file-ignores]
# Intentional lazy loading after logger initialization
"src/code_indexer/server/app.py" = ["E402"]

[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false
ignore_missing_imports = true
no_site_packages = false
explicit_package_bases = true
exclude = [
    "tests/fixtures/cidx-test-repo/.*",
    # Temporary exclusions for obsolete test files - need to be reviewed/updated
    "tests/unit/services/test_granular_state_callback_system.py",
    "tests/unit/progress/test_fix_validation_12_threads.py",
    "tests/unit/services/test_clean_file_chunking_manager.py",
    "tests/unit/services/test_safe_cancellation_strategy.py",
    "tests/unit/services/test_progress_callback_enhancements.py",
    "tests/unit/services/test_progress_display_surgical_fixes.py",
    "tests/unit/services/test_story_02_non_blocking_state_changes.py",
    "tests/unit/services/test_vector_calculation_manager.py",
    "tests/unit/services/test_progress_callback_integration.py",
    "tests/unit/services/test_parallel_processing_replacement.py",
    "tests/integration/services/test_story_02_parallel_file_processing.py",
    "tests/unit/services/test_voyage_threadpool_elimination.py",
    "tests/unit/services/test_file_chunking_manager_slot_integration.py",
    "tests/unit/progress/test_story_04_real_time_progress_calculations.py",
    "tests/unit/bugfixes/test_container_name_resolution_stop_services.py",
    "tests/manual/.*"
]

[[tool.mypy.overrides]]
module = "pydantic.*"
ignore_errors = true

[[tool.mypy.overrides]]
module = "pydantic._internal.*"
ignore_errors = true

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
addopts = "-v"
asyncio_mode = "auto"
asyncio_default_fixture_loop_scope = "function"
tdd_guard_project_root = "."
filterwarnings = [
    # Pydantic v2 deprecations
    "ignore:The `__fields__` attribute is deprecated.*:DeprecationWarning",
    "ignore:.*`__fields_set__` attribute is deprecated.*:DeprecationWarning",
    # pytest-asyncio deprecations
    "ignore:.*pytest-asyncio detected an unclosed event loop.*:DeprecationWarning",
    "ignore:.*There is no current event loop.*:DeprecationWarning",
    # httpx deprecations
    "ignore:.*httpx.AsyncClient.*:DeprecationWarning",
    "ignore:.*httpcore.*:DeprecationWarning",
    # Asyncio runtime warnings
    "ignore:.*coroutine.*was never awaited.*:RuntimeWarning",
    # Coverage warnings
    "ignore:.*Coverage.py warning.*:UserWarning",
    # Generic deprecation from dependencies
    "ignore:.*pkg_resources is deprecated.*:DeprecationWarning",
    # Passlib crypt module deprecation (external dependency issue)
    "ignore:.*'crypt' is deprecated and slated for removal.*:DeprecationWarning",
]
markers = [
    "e2e: End-to-end tests",
    "protocol: JSON-RPC and MCP protocol compliance tests",
    "platform_darwin_x64: macOS Intel tests",
    "platform_darwin_arm64: macOS Apple Silicon tests",
    "platform_linux_x64: Linux x64 tests",
    "platform_windows_x64: Windows x64 tests",
    "voyage_ai: Tests requiring VoyageAI API key",
    "real_api: Tests that make real API calls",
    "slow: Tests that take longer to run",
    "integration: Integration tests requiring multiple services",
    "performance: Performance benchmark tests",
    "unit: Unit tests with mocked dependencies",
    "full_automation: Tests that should only be run in full automation pipeline",
    "requires_ssh: Tests requiring SSH access to external repositories (skipped when CIDX_SKIP_SSH_TESTS=1)",
    "destructive: Tests that modify repository state (require careful cleanup)",
]

[tool.coverage.run]
source = ["src/code_indexer"]
omit = [
    "*/tests/*",
    "*/test_*",
    "setup.py",
]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
]