PXAudit/pyproject.toml at main · LangeLab/PXAudit · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
[project]
name = "pxaudit"
version = "0.1.0"
description = "Proteomics Exchange metadata audit tool"
authors = [
    { name = "eneskemalergin", email = "eneskemalergin@gmail.com" }
]
requires-python = ">=3.12"
dependencies = [
    "click>=8.3.1",
    "pandas>=3.0",
    "requests>=2.32.5",
]

[project.scripts]
pxaudit = "pxaudit.cli:main"

[build-system]
requires = ["uv_build>=0.10.6,<0.11.0"]
build-backend = "uv_build"

[dependency-groups]
dev = [
    "pre-commit>=4.5.1",
    "pytest>=9.0.2",
    "pytest-cov>=7.0.0",
    "ruff>=0.15.7",
]

[tool.ruff]
line-length = 100

[tool.ruff.lint]
select = ["E", "F", "W", "I", "UP", "B", "SIM"]

[tool.pytest.ini_options]
addopts = "--strict-markers --tb=short --cov=pxaudit --cov-report=term-missing -m 'not integration'"
markers = [
    "integration: marks tests as integration tests requiring live PRIDE API access",
]

[tool.coverage.run]
source = ["pxaudit"]
branch = true

[tool.coverage.report]