- RATT
- Prokka
- EMBOSS (seqret)
- Biopython
- CD-HIT
- MCL
- NCBI-BLAST
- eggnog-mapper
All dependencies are available within the environment.yml within a conda environment
The easiest way to install hybran is through the conda package manager:
conda install -c bioconda hybran
-
Download and extract the latest release.
-
Install the dependencies using miniconda (or manually)
# From the hybran directory you downloaded, set up the conda environment with the dependencies
conda env create -n hybran-dev -f environment.yml
conda activate hybran-dev
- Install hybran
pip install --editable .
If you run into any trouble, please let us know over at our issues page.