webgenie_api/pyproject.toml at main · JamesKingWebDev/webgenie_api · GitHub

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[build-system]
requires = ["setuptools>=65.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "webgenie_api"
version = "1.0.0"
description = "FastAPI backend for Gene Regulatory Network inference using Beeline algorithms"
readme = "README.md"
requires-python = ">=3.11"
license = {text = "MIT"}
authors = [
    {name = "WebGenie Team", email = "team@webgenie.dev"},
]
keywords = ["gene-regulatory-networks", "grn", "bioinformatics", "fastapi", "celery"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[project.urls]
Homepage = "https://github.com/Murali-group/Beeline"
Repository = "https://github.com/Murali-group/Beeline"
Documentation = "https://murali-group.github.io/Beeline/"

[project.optional-dependencies]
dev = [
    "pytest>=7.4.3",
    "pytest-asyncio>=0.21.1",
    "pytest-cov>=4.1.0",
    "black>=23.11.0",
    "flake8>=6.1.0",
    "mypy>=1.7.1",
    "isort>=5.12.0",
]

docs = [
    "mkdocs>=1.5.0",
    "mkdocs-material>=9.4.0",
]

[tool.black]
line-length = 88
target-version = ["py311"]
include = '\.pyi?$'
exclude = '''
/(
    \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | _build
  | buck-out
  | build
  | dist
)/
'''

[tool.isort]
profile = "black"
line_length = 88
skip_glob = ["*/migrations/*"]

[tool.mypy]
python_version = "3.11"
check_untyped_defs = true
ignore_missing_imports = true
warn_unused_ignores = true
warn_redundant_casts = true
warn_unused_configs = true

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = "test_*.py"
python_classes = "Test*"
python_functions = "test_*"
asyncio_mode = "auto"

[tool.coverage.run]
source = ["app"]
omit = ["*/tests/*", "*/migrations/*"]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
    "if TYPE_CHECKING:",
]