main.tex

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\usepackage{chngcntr}
% Reset section numbers per appendix chapter
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% Make sections/subsections show the appendix letter: E.1, E.1.1, ...
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%\usepackage{xcolor}
%\usepackage{sectsty}
%\chapterfont{\color{green}}  % sets colour of chapters
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%%%%%%%%%%%
% For equations
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  {\end{tabular}\par\vspace{\belowdisplayskip}}
%%%%%%%%%%%

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% toc
\usepackage{titlesec}
\usepackage[toc,page]{appendix}
%%%%%%%%%%%

\usepackage{amsmath}
\usepackage{pdflscape}
\usepackage{tabularray}
\usepackage{markdown} 
%%%%%%%%%%%%%% Hphenation fix
\usepackage[none]{hyphenat}
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% Table with notes
\usepackage{threeparttable}   % new
\usepackage{siunitx}                    % new
\usepackage{xparse}                     % new
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%%%%%%%%%%%%%%% Line ending fix
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%%%%%%%%%%%%%%% Page distribution fix
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%%%%%%%%%%%%%%%% Font options
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% for equations cmss
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\sansmath
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% in the document preamble for subsection footnotes
\usepackage[stable]{footmisc}

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%TOC Depth
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%%% Last line numbers
\usepackage{lineno}
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\begin{document}
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\input{sections/01_title}
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%deactivate maketitle if Using IFPRI's cover page
%\maketitle
% Use IFPRI's cover page (page= is which page number to insert, in this case first and only page)
%\includepdf[pages={1}, scale=1.01]{ReportCover_IMPACT_2024.pdf}
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\input{sections/02a_information}
\input{sections/02b_authors}
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\input{sections/02c_copyright_and_citation}
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\tableofcontents
\addtocontents{toc}{
\protect\thispagestyle{empty}} 
\thispagestyle{empty} 
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\listoffigures
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\protect\thispagestyle{empty}} 
\thispagestyle{empty} 
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\listoftables
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\protect\thispagestyle{empty}} 
\thispagestyle{empty} 
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\input{sections/03_abstract}
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\input{sections/04_ackn}
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\input{sections/05_abbr}
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\setcounter{section}{0}
\label{chapter1}
\input{sections/10_introduction}
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\label{chapter2}
\input{sections/20_history}
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\label{chapter3}
\input{sections/30_scenario_analysis}
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\label{chapter4}
\input{sections/40_impact_mmm}
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\label{chapter5}
\input{sections/50_impact_model_system}
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\label{chapter6}
\input{sections/60_summary}
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\begin{appendices}

\chapter{Geography}
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\input{appendix/a}

\chapter{Activities and commodities}
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\input{appendix/b}

\chapter{Data inputs and outputs}
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\input{appendix/c}

\chapter{Crop models}
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\renewcommand{\thesubsubsection}{D\arabic{subsubsection}}
\input{appendix/d}

\chapter{Water models}
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\renewcommand{\thesection}{E\arabic{section}}
\renewcommand{\thesubsection}{E\arabic{subsection}}
\renewcommand{\thesubsubsection}{E\arabic{subsubsection}}
\input{appendix/e}

\chapter{Changelog}
\input{appendix/f}

\end{appendices}

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\clearpage
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\printbibliography
\end{multicols}
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\clearpage
\input{sections/02c_copyright_and_citation}
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\end{document}