Prediction of interactions without being skeleton transformed

[ahmedabbas811]

Hi all,

I understand that the training was done using skeleton transformed Hi-C, so the outputs are also skeleton transformed.

How to get the output predictions without being skeleton transformed? Is there a way to do that?

Thanks

[rschwess]

Hi,

I'm afraid we never implemented a back transformation.

In theory, one could record the average interaction strength per skeleton bin and then try to align the predicted score back to interactions using that but this is purely a suggestion.

But we never tried that.