This directory contains all files necessary for extracting patches (sub-images) from whole-slide images in NDPI-format.
This is a custom implementation of the SimSiam algorithm that is specialized to the file structure created by the modules in Patching.
Of note, this code depends on a implemetation of the LARS algorithm in a module LARC, which can be obtained from NVIDIA's github repositories.
This is a custom implementation of the CLAM algorithm that is specialized to the data structures created by the code above. This code additionally depends on a python-implementation of the smooth-topk loss function.
Please report any issues in the GitHub forum or contact the author directly.