Dead links in documentation

[adigitoleo]

There are numerous dead links in the documentation, including in the README. A full list is provided below (at least for all http://amcg*, on a fresh source tree).

The new project homepage could be https://fluidityproject.github.io

For the rest, I'm not sure, it seems like the AMCG homepage changed to https://www.imperial.ac.uk/earth-science/research/research-groups/amcg/

./README
22:http://amcg.ese.ic.ac.uk

./schemas/fluidity_options.rnc
156:            ## See http://amcg.ese.ic.ac.uk/index.php?title=Local:Checkpointing_from_new_options
4959:         ## See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number

./schemas/fluidity_options.rng
193:See http://amcg.ese.ic.ac.uk/index.php?title=Local:Checkpointing_from_new_options</a:documentatio
n>
6252:See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number

./schemas/test_advection_diffusion_options.rnc
239:               ## See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number
3531:         ## See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number

./femtools/doc/femtools_manual.tex
1133:\url{http://amcg.ese.ic.ac.uk/spud}.

./python/setup.py.in
17:      url = "http://amcg.ese.ic.ac.uk",

./schemas/test_advection_diffusion_options.rng
304:See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number
4234:See http://amcg.ese.ic.ac.uk/index.php?title=Local:Diagnostics#CFL_Number

./libspud/dxdiff/setup.py
17:      url = "http://amcg.ese.ic.ac.uk",

./libspud/doc/diamond_manual.tex
90:http://amcg.ese.ic.ac.uk/svn/fluidity/trunk/tools/fluidity_options.rng

./libspud/diamond/README.txt
2:http://amcg.ese.ic.ac.uk/index.php?title=Local:Diamond
5:http://amcg.ese.ic.ac.uk/index.php?title=Local:Options
8:http://amcg.ese.ic.ac.uk/index.php?title=Local:Running_Fluidity_from_new_options

./libspud/diamond/setup.py.in
81:      url = "http://amcg.ese.ic.ac.uk",

./mayavi/mayavi_amcg/filters/projection_and_depth_stretch.py
7:# Original code by Tim Bond <http://amcg.ese.ic.ac.uk/index.php?title=Local:Using_Mayavi2>

./debian/copyright
4:It was downloaded from http://amcg.ese.ic.ac.uk/fluidity

./debian/control
8:Homepage: http://amcg.ese.ic.ac.uk/fluidity

./tools/stat2csv.py
5:# http://amcg.ese.ic.ac.uk/index.php?title=Local:Fluidity_tools

./manual/primer_fedora.tex
5:\href{http://amcg.ese.ic.ac.uk/Fluidity}{http://amcg.ese.ic.ac.uk/Fluidity}

./manual/fluidity_manual.tex
192:\lstinline[language=html]+http://amcg.ese.ic.ac.uk+

./manual/about.tex
21:A further source of material may be found at \url{http://amcg.ese.ic.ac.uk/}

./manual/configuring_fluidity.tex
36:\href{http://amcg.ese.ic.ac.uk/spud}{the Spud website}.

./manual/primer_opensuse.tex
5:\href{http://amcg.ese.ic.ac.uk/Fluidity}{http://amcg.ese.ic.ac.uk/Fluidity}
21:sudo zypper ar -f http://amcg.ese.ic.ac.uk/yast/opensuse/12.3/

./manual/examples.tex
303:The expected dynamics of a lock-exchange flow are observed, figure \ref{fig:lock_exchange}: two g
ravity currents propagate in opposite directions with the foremost point of the no-slip front raised
above the lower boundary. Kelvin--Helmholtz billows form at the interface enhancing the mixing of the
 two fluids which would not be observed with a hydrostatic formulation. The mesh adapts well, increas
ing the resolution around the interface and Kelvin--Helmholtz billows with anisotropic elements. Simi
lar images can be generated by visualising the vtu files using Paraview, see the \href{http://amcg.es
e.ic.ac.uk/index.php?title=Cook_Book}{Cook Book}\ for more information.
1050:the vtu files using Paraview or Mayavi2, see the \href{http://amcg-www.ese.ic.ac.uk/}{AMCG websi
te}\ for more information.

./manual/primer_redhat.tex
5:\href{http://amcg.ese.ic.ac.uk/Fluidity}{http://amcg.ese.ic.ac.uk/Fluidity}

./manual/external_libraries.tex
144:                   http://amcg.ese.ic.ac.uk/yum/rhel/6/fluidity.repo
184:sudo yum-config-manager --add-repo http://amcg.ese.ic.ac.uk/yum/fedora/19/fluidity.repo
222:sudo zypper ar -f http://amcg.ese.ic.ac.uk/yast/opensuse/12.3/

./manual/paraviewman.tex
27:deb http://amcg.ese.ic.ac.uk/debian intrepid main contrib non-free
28:deb-src http://amcg.ese.ic.ac.uk/debian intrepid main contrib non-free

./manual/meshes.tex
48:\url{http://amcg.ese.ic.ac.uk/files/amcg-gmsh-tutorial.pdf}. Tutorials
402:See the \href{http://amcg.ese.ic.ac.uk/terreno}{Terreno website}\ for more information.
416:For more information see the \href{http://geuz.org/gmsh/}{Gmsh website}\ or the \href{http://amcg
.ese.ic.ac.uk}{AMCG
426:in the future be available on the \href{http://amcg.ese.ic.ac.uk}{AMCG website}.

./manual/visualisation_and_diagnostics.tex
30:See the \href{http://amcg-www.ese.ic.ac.uk/}{AMCG website}\ for more information.
329:A full list of the available tools is given in table \ref{table:vtktools_list}. A summary can als
o be obtained by typing \lstinline[language=Python]+help(vtktools)+ in an ipython session.  Further e
xamples of use can be found in the online at \href{http://amcg.ese.ic.ac.uk/index.php?title=Cook_Book
}{Cook Book}\, in the python scripts used for postprocessing of the examples and in the test cases.
415:\caption[Table of vtktools]{Table of tools available in vtktools for extraction and analysis of d
ata in vtu and pvtu files. The tools which are methods can be applied to an object created from a vtu
 or pvtu with \lstinline[language=Python]+data = vtktools.vtu('example.vtu')+. The methods can then b
e used with \lstinline[language=Python]+data.method(arguments)+. Note only the \lstinline[language=Py
thon]+Write+ method can change the original vtu pr pvtu. The functions are used as usual \lstinline[l
anguage=Python]+python+ functions. See section \ref{sec:diagnostics_vtk_tools}, the \href{http://amcg
.ese.ic.ac.uk/index.php?title=Cook_Book}{Cook Book}\, the postprocessing python scripts in the exampl
es, the test cases and the source code for the python tools in \lstinline[language = bash]+ tools+ fo
r further examples of use. The list can also be obtained in a ipython session with the command \lstin
line[language=Python]+help(vtktools)+.}

./manual/trouble_shooting.tex
8:Secondly, have a look at our ''Cookbook for \fluidity`` (\url{http://amcg.ese.ic.ac.uk/index.php?ti
tle=Cook_Book}). This webpage provides examples of how to set up particular types of problems in \flu
idity.

./manual/primer_ubuntu.tex
5:\href{http://amcg.ese.ic.ac.uk/Fluidity}{http://amcg.ese.ic.ac.uk/Fluidity}

./tests/diamond_validation/README
7:(see http://amcg.ese.ic.ac.uk/index.php?title=Spud#Diamond ) against a supplied