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StressGranules - WIP

This repository contains all analyses and code associated with our study on stress granule signatures, as described in [DOI placeholder].

DISCLAIMER: The code and analyses are commented, but in an informal manner.

Repository Structure

  • Datasets/
    Contains all publicly available datasets used in the study, as well as scripts for SG signature development. Each dataset includes:

    • An .Rmd file with the analysis
    • A corresponding .html output

  • Scripts/
    Bash scripts used for preprocessing datasets prior to downstream analyses.

  • Files/
    Includes reference and result files:

    • Ensembl gene length file
    • Defined SG signatures: SG1
    • Purified whole-cell and stress granule signals

  • Simulations/
    Contains simulation scripts and pipelines related to:

    • Spin-Sim
    • MimiSeq

Citation

If you use this repository or any of its contents, please cite our associated publication:

[Insert full citation and DOI once available]

Contact

If you have any doubts or other issues related to the analyses and provided files, please feel free to email Alex Kaizeler at: alexandre.afonso@gimm.pt