u-segment3D/pyproject.toml at master · DanuserLab/u-segment3D · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"


[tool.setuptools]
packages = ["segment3D"]


#[tool.setuptools.packages.find]
#where = ["."]  # list of folders that contain the packages (["."] by default)
#include = ["segment3D"]  # package names should match these glob patterns (["*"] by default)
#exclude = ['__pycache__', '__init__.py']  # exclude packages matching these glob patterns (empty by default)
#namespaces = false  # to disable scanning PEP 420 namespaces (true by default)


[project]
name="u-Segment3D"
description="Generate consensus 3D segmentation from 2D segmented stacks"
authors = [{name='Felix Y. Zhou', email='felixzhou1@gmail.com'}]
readme = "README.md"
license={file = "LICENSE"}
version = "0.1.4"
classifiers = [
    "Intended Audience :: Developers",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: Microsoft :: Windows",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12"
]

requires-python = ">=3.9, <3.13"
dependencies = [
    'numpy<2.0',
    'pyarrow<21',
    'cellpose<4.0',
    'cupy-cuda11x; sys_platform!="darwin"',
    'dask[complete]',
    'scikit-image',
    'scikit-learn',
    'imagecodecs<2025',
    'contourpy<=1.2.0',
    'opencv-python-headless',
    'scipy',
    'numba',
    'matplotlib',
    'seaborn',
    'trimesh',
    'multiprocess',
    'tiler',
    'connected-components-3d',
    'edt<=3.0.0',
    'tqdm',
    'scikit-fmm; sys_platform=="win"',
    'czifile'
    ]

[project.urls]
Homepage = "https://github.com/DanuserLab/u-segment3D"
Issues = "https://github.com/DanuserLab/u-segment3D/issues"