Currently, the RNA-seq workflow basically is a Bash-workflow wrapped into Roddy.
- Migrate the single job into Nextflow.
- Remove/rename all references to
RODDY_ from the scripts
- Migrate also the resource requirements. Start with the
xl resource set
- Do not start yet refactoring jobs.
- The Nextflow workflow should run on the
dkfzLsf profile using the existing environment modules.
- Document the workflow usage (example call, variables)
Currently, the RNA-seq workflow basically is a Bash-workflow wrapped into Roddy.
RODDY_from the scriptsxlresource setdkfzLsfprofile using the existing environment modules.