diff --git a/test/TestCellSortingLiteratePaper.hpp b/test/TestCellSortingLiteratePaper.hpp index c1ce94d..8e75701 100644 --- a/test/TestCellSortingLiteratePaper.hpp +++ b/test/TestCellSortingLiteratePaper.hpp @@ -43,7 +43,8 @@ #include "MeshBasedCellPopulationWithGhostNodes.hpp" #include "HoneycombMeshGenerator.hpp" -#include "DifferentialAdhesionGeneralisedLinearSpringForce.hpp" +#include "DifferentialAdhesionPathmanathanInteractionForce.hpp" +#include "DifferentialAdhesionLinearSpringForce.hpp" #include "OnLatticeSimulation.hpp" #include "CellPopulationAdjacencyMatrixWriter.hpp" @@ -311,8 +312,8 @@ class TestCellSortingLiteratePaper : public AbstractCellBasedWithTimingsTestSuit simulator.SetEndTime(M_TIME_TO_STEADY_STATE); // Create a force law and pass it to the simulation - MAKE_PTR(DifferentialAdhesionGeneralisedLinearSpringForce<2>, p_differential_adhesion_force); - p_differential_adhesion_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(DifferentialAdhesionPathmanathanInteractionForce<2>, p_differential_adhesion_force); + p_differential_adhesion_force->SetSpringStiffness(50.0); p_differential_adhesion_force->SetHomotypicLabelledSpringConstantMultiplier(1.0); p_differential_adhesion_force->SetHeterotypicSpringConstantMultiplier(0.1); p_differential_adhesion_force->SetCutOffLength(cut_off_length); @@ -384,8 +385,8 @@ class TestCellSortingLiteratePaper : public AbstractCellBasedWithTimingsTestSuit simulator.SetEndTime(M_TIME_TO_STEADY_STATE); // Create a force law and pass it to the simulation - MAKE_PTR(DifferentialAdhesionGeneralisedLinearSpringForce<2>, p_differential_adhesion_force); - p_differential_adhesion_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(DifferentialAdhesionLinearSpringForce<2>, p_differential_adhesion_force); + p_differential_adhesion_force->SetSpringStiffness(50.0); p_differential_adhesion_force->SetHomotypicLabelledSpringConstantMultiplier(1.0); p_differential_adhesion_force->SetHeterotypicSpringConstantMultiplier(0.1); simulator.AddForce(p_differential_adhesion_force); diff --git a/test/TestCylindricalCryptLiteratePaper.hpp b/test/TestCylindricalCryptLiteratePaper.hpp index 4251564..e1a3094 100644 --- a/test/TestCylindricalCryptLiteratePaper.hpp +++ b/test/TestCylindricalCryptLiteratePaper.hpp @@ -47,7 +47,8 @@ #include "OnLatticeSimulation.hpp" #include "NagaiHondaForce.hpp" -#include "RepulsionForce.hpp" +#include "LinearSpringForce.hpp" +#include "PathmanathanInteractionForce.hpp" #include "DiffusionCaUpdateRule.hpp" #include "VolumeConstraintPottsUpdateRule.hpp" #include "AdhesionPottsUpdateRule.hpp" @@ -329,8 +330,8 @@ class TestCylindricalCryptLiteratePaper : public AbstractCellBasedWithTimingsTes simulator.AddSimulationModifier(p_modifier); // Create a force law and pass it to the simulation - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(PathmanathanInteractionForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); p_linear_force->SetCutOffLength(cut_off_length); simulator.AddForce(p_linear_force); @@ -407,8 +408,8 @@ class TestCylindricalCryptLiteratePaper : public AbstractCellBasedWithTimingsTes simulator.AddSimulationModifier(p_modifier); // Create a force law and pass it to the simulation - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(LinearSpringForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); simulator.AddForce(p_linear_force); // Solid base boundary condition diff --git a/test/TestDeltaNotchLiteratePaper.hpp b/test/TestDeltaNotchLiteratePaper.hpp index 89c8ad2..5be3823 100644 --- a/test/TestDeltaNotchLiteratePaper.hpp +++ b/test/TestDeltaNotchLiteratePaper.hpp @@ -41,9 +41,11 @@ #include "MeshBasedCellPopulationWithGhostNodes.hpp" #include "HoneycombMeshGenerator.hpp" +#include "NodesOnlyMesh.hpp" +#include "NodeBasedCellPopulation.hpp" #include "DiffusionForce.hpp" -#include "RepulsionForce.hpp" -#include "GeneralisedLinearSpringForce.hpp" +#include "LinearSpringForce.hpp" +#include "PathmanathanInteractionForce.hpp" #include "OnLatticeSimulation.hpp" #include "DeltaNotchTrackingModifier.hpp" @@ -314,8 +316,8 @@ class TestDeltaNotchLiteratePaper: public AbstractCellBasedWithTimingsTestSuite simulator.AddSimulationModifier(p_differentiation_modifier); // Create a force law and pass it to the simulation - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(PathmanathanInteractionForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); p_linear_force->SetCutOffLength(cut_off_length); simulator.AddForce(p_linear_force); @@ -378,8 +380,8 @@ class TestDeltaNotchLiteratePaper: public AbstractCellBasedWithTimingsTestSuite simulator.AddSimulationModifier(p_differentiation_modifier); // Create a force law and pass it to the simulation - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(LinearSpringForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); p_linear_force->SetCutOffLength(1.5); simulator.AddForce(p_linear_force); diff --git a/test/TestMorphogenMonolayerLiteratePaper.hpp b/test/TestMorphogenMonolayerLiteratePaper.hpp index d801af4..60ae90b 100644 --- a/test/TestMorphogenMonolayerLiteratePaper.hpp +++ b/test/TestMorphogenMonolayerLiteratePaper.hpp @@ -44,10 +44,10 @@ #include "MeshBasedCellPopulationWithGhostNodes.hpp" #include "HoneycombMeshGenerator.hpp" -#include "GeneralisedLinearSpringForce.hpp" +#include "LinearSpringForce.hpp" +#include "PathmanathanInteractionForce.hpp" #include "NodeBasedCellPopulation.hpp" -#include "RepulsionForce.hpp" #include "VertexBasedCellPopulation.hpp" #include "HoneycombVertexMeshGenerator.hpp" @@ -341,8 +341,8 @@ class TestMorphogenMonolayerLiteratePaper : public AbstractCellBasedWithTimingsT simulator.SetOutputDivisionLocations(true); // Create a force law and pass it to the simulation - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(PathmanathanInteractionForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); p_linear_force->SetCutOffLength(cut_off_length); simulator.AddForce(p_linear_force); @@ -416,8 +416,8 @@ class TestMorphogenMonolayerLiteratePaper : public AbstractCellBasedWithTimingsT simulator.SetOutputDivisionLocations(true); - MAKE_PTR(GeneralisedLinearSpringForce<2>, p_linear_force); - p_linear_force->SetMeinekeSpringStiffness(50.0); + MAKE_PTR(LinearSpringForce<2>, p_linear_force); + p_linear_force->SetSpringStiffness(50.0); p_linear_force->SetCutOffLength(1.5); simulator.AddForce(p_linear_force);