DPFunc/DPFunc_env.yml at main · CSUBioGroup/DPFunc · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
name: py38dgl
channels:
  - pytorch
  - dglteam/label/cu113
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - arrow-cpp=16.1.0=hc1eb8f0_0
  - asttokens=2.0.5=pyhd3eb1b0_0
  - aws-c-auth=0.6.19=h5eee18b_0
  - aws-c-cal=0.5.20=hdbd6064_0
  - aws-c-common=0.8.5=h5eee18b_0
  - aws-c-compression=0.2.16=h5eee18b_0
  - aws-c-event-stream=0.2.15=h6a678d5_0
  - aws-c-http=0.6.25=h5eee18b_0
  - aws-c-io=0.13.10=h5eee18b_0
  - aws-c-mqtt=0.7.13=h5eee18b_0
  - aws-c-s3=0.1.51=hdbd6064_0
  - aws-c-sdkutils=0.1.6=h5eee18b_0
  - aws-checksums=0.1.13=h5eee18b_0
  - aws-crt-cpp=0.18.16=h6a678d5_0
  - aws-sdk-cpp=1.10.55=h721c034_0
  - backcall=0.2.0=pyhd3eb1b0_0
  - blas=1.0=mkl
  - boost-cpp=1.82.0=hdb19cb5_2
  - bottleneck=1.3.7=py38ha9d4c09_0
  - brotli-python=1.0.9=py38h6a678d5_8
  - bzip2=1.0.8=h5eee18b_6
  - c-ares=1.19.1=h5eee18b_0
  - ca-certificates=2025.2.25=h06a4308_0
  - certifi=2024.8.30=py38h06a4308_0
  - charset-normalizer=3.3.2=pyhd3eb1b0_0
  - click=8.1.7=py38h06a4308_0
  - comm=0.2.1=py38h06a4308_0
  - cramjam=2.7.0=py38ha89cbab_0
  - cudatoolkit=11.3.1=h2bc3f7f_2
  - debugpy=1.6.7=py38h6a678d5_0
  - decorator=5.1.1=pyhd3eb1b0_0
  - dgl=1.1.0.cu113=py38_0
  - executing=0.8.3=pyhd3eb1b0_0
  - fastparquet=2024.2.0=py38ha9d4c09_0
  - ffmpeg=4.3=hf484d3e_0
  - freetype=2.12.1=h4a9f257_0
  - fsspec=2024.6.1=py38h06a4308_0
  - gflags=2.2.2=h6a678d5_1
  - glog=0.5.0=h6a678d5_1
  - gmp=6.2.1=h295c915_3
  - gnutls=3.6.15=he1e5248_0
  - icu=73.1=h6a678d5_0
  - idna=3.7=py38h06a4308_0
  - importlib-metadata=7.0.1=py38h06a4308_0
  - importlib_metadata=7.0.1=hd3eb1b0_0
  - intel-openmp=2023.1.0=hdb19cb5_46306
  - ipykernel=6.29.5=py38h06a4308_0
  - ipython=8.12.2=py38h06a4308_0
  - jedi=0.19.1=py38h06a4308_0
  - joblib=1.4.2=py38h06a4308_0
  - jpeg=9e=h5eee18b_3
  - jupyter_client=8.6.0=py38h06a4308_0
  - jupyter_core=5.7.2=py38h06a4308_0
  - krb5=1.20.1=h143b758_1
  - lame=3.100=h7b6447c_0
  - lcms2=2.16=hb9589c4_0
  - ld_impl_linux-64=2.40=h12ee557_0
  - lerc=4.0.0=h6a678d5_0
  - libabseil=20240116.2=cxx17_h6a678d5_0
  - libboost=1.82.0=h109eef0_2
  - libbrotlicommon=1.0.9=h5eee18b_9
  - libbrotlidec=1.0.9=h5eee18b_9
  - libbrotlienc=1.0.9=h5eee18b_9
  - libcurl=8.12.1=hc9e6f67_0
  - libdeflate=1.22=h5eee18b_0
  - libedit=3.1.20230828=h5eee18b_0
  - libev=4.33=h7f8727e_1
  - libevent=2.1.12=hdbd6064_1
  - libffi=3.4.4=h6a678d5_1
  - libgcc-ng=11.2.0=h1234567_1
  - libgfortran-ng=11.2.0=h00389a5_1
  - libgfortran5=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libgrpc=1.62.2=h2d74bed_0
  - libiconv=1.16=h5eee18b_3
  - libidn2=2.3.4=h5eee18b_0
  - libnghttp2=1.57.0=h2d74bed_0
  - libpng=1.6.39=h5eee18b_0
  - libprotobuf=4.25.3=he621ea3_0
  - libsodium=1.0.18=h7b6447c_0
  - libssh2=1.11.1=h251f7ec_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libtasn1=4.19.0=h5eee18b_0
  - libthrift=0.15.0=h1795dd8_2
  - libtiff=4.5.1=hffd6297_1
  - libunistring=0.9.10=h27cfd23_0
  - libwebp-base=1.3.2=h5eee18b_1
  - lz4-c=1.9.4=h6a678d5_1
  - matplotlib-inline=0.1.6=py38h06a4308_0
  - mkl=2023.1.0=h213fc3f_46344
  - mkl-service=2.4.0=py38h5eee18b_1
  - mkl_fft=1.3.8=py38h5eee18b_0
  - mkl_random=1.2.4=py38hdb19cb5_0
  - ncurses=6.4=h6a678d5_0
  - nest-asyncio=1.6.0=py38h06a4308_0
  - nettle=3.7.3=hbbd107a_1
  - networkx=3.1=py38h06a4308_0
  - numexpr=2.8.4=py38hc78ab66_1
  - numpy=1.24.3=py38hf6e8229_1
  - numpy-base=1.24.3=py38h060ed82_1
  - openh264=2.1.1=h4ff587b_0
  - openjpeg=2.5.2=he7f1fd0_0
  - openssl=3.0.15=h5eee18b_0
  - orc=2.0.1=h2d29ad5_0
  - packaging=24.1=py38h06a4308_0
  - pandas=2.0.3=py38h1128e8f_0
  - parso=0.8.3=pyhd3eb1b0_0
  - pexpect=4.8.0=pyhd3eb1b0_3
  - pickleshare=0.7.5=pyhd3eb1b0_1003
  - pillow=10.4.0=py38h5eee18b_0
  - pip=24.2=py38h06a4308_0
  - platformdirs=3.10.0=py38h06a4308_0
  - pooch=1.7.0=py38h06a4308_0
  - prompt-toolkit=3.0.43=py38h06a4308_0
  - psutil=5.9.0=py38h5eee18b_0
  - ptyprocess=0.7.0=pyhd3eb1b0_2
  - pure_eval=0.2.2=pyhd3eb1b0_0
  - pyarrow=16.1.0=py38h1128e8f_0
  - pygments=2.15.1=py38h06a4308_1
  - pysocks=1.7.1=py38h06a4308_0
  - python=3.8.20=he870216_0
  - python-dateutil=2.9.0post0=py38h06a4308_2
  - python-tzdata=2023.3=pyhd3eb1b0_0
  - pytorch=1.12.0=py3.8_cuda11.3_cudnn8.3.2_0
  - pytorch-mutex=1.0=cuda
  - pytz=2024.1=py38h06a4308_0
  - pyzmq=25.1.2=py38h6a678d5_0
  - re2=2022.04.01=h295c915_0
  - readline=8.2=h5eee18b_0
  - requests=2.32.3=py38h06a4308_0
  - ruamel=1.0=py38h06a4308_2
  - ruamel.yaml.clib=0.2.8=py38h5eee18b_0
  - ruamel_yaml=0.17.21=py38h5eee18b_0
  - s2n=1.3.27=hdbd6064_0
  - scikit-learn=1.3.0=py38h1128e8f_1
  - scipy=1.10.1=py38hf6e8229_1
  - setuptools=75.1.0=py38h06a4308_0
  - six=1.16.0=pyhd3eb1b0_1
  - snappy=1.2.1=h6a678d5_0
  - sqlite=3.45.3=h5eee18b_0
  - stack_data=0.2.0=pyhd3eb1b0_0
  - tbb=2021.8.0=hdb19cb5_0
  - threadpoolctl=3.5.0=py38h2f386ee_0
  - tk=8.6.14=h39e8969_0
  - torchaudio=0.12.0=py38_cu113
  - torchvision=0.13.0=py38_cu113
  - tornado=6.4.1=py38h5eee18b_0
  - tqdm=4.66.5=py38h2f386ee_0
  - traitlets=5.14.3=py38h06a4308_0
  - typing_extensions=4.11.0=py38h06a4308_0
  - tzdata=2025a=h04d1e81_0
  - urllib3=2.2.3=py38h06a4308_0
  - utf8proc=2.6.1=h5eee18b_1
  - wcwidth=0.2.5=pyhd3eb1b0_0
  - wheel=0.44.0=py38h06a4308_0
  - xz=5.4.6=h5eee18b_1
  - zeromq=4.3.5=h6a678d5_0
  - zipp=3.20.2=py38h06a4308_0
  - zlib=1.2.13=h5eee18b_1
  - zstd=1.5.6=hc292b87_0
  - pip:
      - biopython==1.83
      - logzero==1.7.0
      - ruamel-yaml==0.18.10
prefix: /mnt/rna01/wangwk/miniconda3/envs/py38dgl