From 15f01818bd2cd33803cceaa72af63d8de2ab6022 Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Fri, 5 Dec 2025 14:00:49 +0000 Subject: [PATCH 1/3] output of make lint & make fix on all instances --- usegalaxy.cz/fasta_fastq.yml.lock | 4 ++-- usegalaxy.cz/imaging.yml.lock | 16 ++++++++-------- usegalaxy.cz/transcriptomics.yml.lock | 8 ++++---- 3 files changed, 14 insertions(+), 14 deletions(-) diff --git a/usegalaxy.cz/fasta_fastq.yml.lock b/usegalaxy.cz/fasta_fastq.yml.lock index 5f88d96..4824ccf 100644 --- a/usegalaxy.cz/fasta_fastq.yml.lock +++ b/usegalaxy.cz/fasta_fastq.yml.lock @@ -672,5 +672,5 @@ tools: owner: bgruening revisions: - 76ea9d4604bc - tool_panel_section_id: uncategorized - tool_panel_section_label: Uncategorized + tool_panel_section_id: fasta_fastq + tool_panel_section_label: FASTA/FASTQ diff --git a/usegalaxy.cz/imaging.yml.lock b/usegalaxy.cz/imaging.yml.lock index da7f698..90938c9 100644 --- a/usegalaxy.cz/imaging.yml.lock +++ b/usegalaxy.cz/imaging.yml.lock @@ -756,24 +756,24 @@ tools: revisions: - 49c178651194 - b1ead1b7e0aa - tool_panel_section_id: uncategorized - tool_panel_section_label: Uncategorized + tool_panel_section_id: imaging + tool_panel_section_label: Imaging - name: scimap_phenotyping owner: goeckslab revisions: - 37dc4f51e827 - 88fca6e905be - tool_panel_section_id: uncategorized - tool_panel_section_label: Uncategorized + tool_panel_section_id: imaging + tool_panel_section_label: Imaging - name: backsub owner: goeckslab revisions: - bf9f98a7f936 - tool_panel_section_id: uncategorized - tool_panel_section_label: Uncategorized + tool_panel_section_id: imaging + tool_panel_section_label: Imaging - name: scimap_plotting owner: goeckslab revisions: - 05a8d9dea3df - tool_panel_section_id: uncategorized - tool_panel_section_label: Uncategorized + tool_panel_section_id: imaging + tool_panel_section_label: Imaging diff --git a/usegalaxy.cz/transcriptomics.yml.lock b/usegalaxy.cz/transcriptomics.yml.lock index 01c728a..37cde41 100644 --- a/usegalaxy.cz/transcriptomics.yml.lock +++ b/usegalaxy.cz/transcriptomics.yml.lock @@ -8,12 +8,12 @@ tools: revisions: - 2557d7869e78 - ef054892d47f - tool_panel_section_id: transcriptomics - tool_panel_section_label: Transcriptomics + tool_panel_section_id: celltypescan + tool_panel_section_label: CellTypeScan - name: anndata_ops owner: ebi-gxa revisions: - 7ef2403a250d - a4774b7b2e85 - tool_panel_section_id: hca_scanpy - tool_panel_section_label: HCA-Scanpy + tool_panel_section_id: celltypescan + tool_panel_section_label: CellTypeScan From 7bc8741c2af71c6d018738bb867acbfa618250ee Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Fri, 5 Dec 2025 15:07:01 +0100 Subject: [PATCH 2/3] clarify transcriptomics seciton label --- usegalaxy.cz/transcriptomics.yml.lock | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/usegalaxy.cz/transcriptomics.yml.lock b/usegalaxy.cz/transcriptomics.yml.lock index 37cde41..28c59af 100644 --- a/usegalaxy.cz/transcriptomics.yml.lock +++ b/usegalaxy.cz/transcriptomics.yml.lock @@ -8,12 +8,12 @@ tools: revisions: - 2557d7869e78 - ef054892d47f - tool_panel_section_id: celltypescan - tool_panel_section_label: CellTypeScan + tool_panel_section_id: transcriptomics + tool_panel_section_label: Transcriptomics - name: anndata_ops owner: ebi-gxa revisions: - 7ef2403a250d - a4774b7b2e85 - tool_panel_section_id: celltypescan - tool_panel_section_label: CellTypeScan + tool_panel_section_id: transcriptomics + tool_panel_section_label: Transcriptomics From 7e27159cfaf5d913e185571fc4426c7dd0e9b48c Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Fri, 5 Dec 2025 15:08:52 +0100 Subject: [PATCH 3/3] one more touch --- usegalaxy.cz/transcriptomics.yml | 2 +- usegalaxy.cz/transcriptomics.yml.lock | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/usegalaxy.cz/transcriptomics.yml b/usegalaxy.cz/transcriptomics.yml index 16e60cd..63dde76 100644 --- a/usegalaxy.cz/transcriptomics.yml +++ b/usegalaxy.cz/transcriptomics.yml @@ -1,4 +1,4 @@ -tool_panel_section_label: CellTypeScan +tool_panel_section_label: Transcriptomics tools: - name: decoupler_pseudobulk owner: ebi-gxa diff --git a/usegalaxy.cz/transcriptomics.yml.lock b/usegalaxy.cz/transcriptomics.yml.lock index 28c59af..478c9f1 100644 --- a/usegalaxy.cz/transcriptomics.yml.lock +++ b/usegalaxy.cz/transcriptomics.yml.lock @@ -1,7 +1,7 @@ install_repository_dependencies: false install_resolver_dependencies: false install_tool_dependencies: false -tool_panel_section_label: CellTypeScan +tool_panel_section_label: Transcriptomics tools: - name: decoupler_pseudobulk owner: ebi-gxa