forked from physionetchallenges/python-example-2026
-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathrun.ps1
More file actions
275 lines (216 loc) · 8.08 KB
/
run.ps1
File metadata and controls
275 lines (216 loc) · 8.08 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
param(
[Parameter(Mandatory=$true)]
[ValidateSet(
"build",
"smoke",
"train",
"train-smoke",
"run",
"run-smoke",
"eval",
"eval-smoke",
"train-dev",
"run-dev",
"eval-dev",
"clean"
)]
[string]$Command
)
# ============================================
# CONFIGURACIÓN
# ============================================
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
# IMPORTANTE:
# Si tu dataset no está en data/training_set o data/test_set,
# modifica estas rutas.
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
$TRAIN_DATA_REL = "data/training_set"
$RUN_DATA_REL = "data/test_set"
$SMOKE_DATA_REL = "data/training_smoke"
$IMAGE_NAME = "cinc2026"
$MODEL_FULL_REL = "model"
$MODEL_SMOKE_REL = "model_smoke"
$FEATURE_CACHE_REL = ".feature_cache"
$OUT_FULL_REL = "outputs"
$OUT_SMOKE_REL = "outputs_smoke"
$DEMOGRAPHICS_FILE = "demographics.csv"
# ============================================
# FUNCIONES AUXILIARES
# ============================================
function Get-AbsolutePath($relativePath) {
return (Resolve-Path $relativePath).Path
}
function Ensure-Directory($path) {
if (!(Test-Path $path)) {
New-Item -ItemType Directory -Force -Path $path | Out-Null
}
}
function Invoke-Evaluation($DataPath, $OutputPath, $Label) {
Write-Host "Evaluating $Label predictions..."
docker run --rm `
-v "${DataPath}:/challenge/eval_data:ro" `
-v "${OutputPath}:/challenge/eval_outputs:ro" `
$IMAGE_NAME `
python evaluate_model.py -d "/challenge/eval_data/$DEMOGRAPHICS_FILE" -o "/challenge/eval_outputs/$DEMOGRAPHICS_FILE"
}
function Invoke-EvaluationDev($CodePath, $DataPath, $OutputPath, $Label) {
Write-Host "Evaluating $Label predictions..."
docker run --rm `
-v "${CodePath}:/challenge" `
-v "${DataPath}:/challenge/eval_data:ro" `
$IMAGE_NAME `
python evaluate_model.py -d "/challenge/eval_data/$DEMOGRAPHICS_FILE" -o "$OutputPath/$DEMOGRAPHICS_FILE"
}
function Test-DatasetHasLabels($DataPath) {
$demographicsPath = Join-Path $DataPath $DEMOGRAPHICS_FILE
if (!(Test-Path $demographicsPath)) {
return $false
}
$header = Get-Content -Path $demographicsPath -TotalCount 1
return $header -match "Cognitive_Impairment"
}
# ============================================
# COMANDOS
# ============================================
function Build-Image {
docker build -t $IMAGE_NAME .
}
function Create-Smoke {
Write-Host "Creando dataset smoke..."
powershell -ExecutionPolicy Bypass -File scripts/create_smoke.ps1
}
function Train-Full {
$FULL_DATA = Get-AbsolutePath $TRAIN_DATA_REL
$MODEL_FULL = Join-Path (Get-AbsolutePath ".") $MODEL_FULL_REL
$FEATURE_CACHE = Join-Path (Get-AbsolutePath ".") $FEATURE_CACHE_REL
Ensure-Directory $MODEL_FULL
Ensure-Directory $FEATURE_CACHE
docker run --rm `
-v "${FULL_DATA}:/challenge/training_data:ro" `
-v "${MODEL_FULL}:/challenge/model" `
-v "${FEATURE_CACHE}:/challenge/.feature_cache" `
$IMAGE_NAME `
python train_model.py -d training_data -m model -v
}
function Train-Smoke {
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
$MODEL_SMOKE = Join-Path (Get-AbsolutePath ".") $MODEL_SMOKE_REL
$FEATURE_CACHE = Join-Path (Get-AbsolutePath ".") $FEATURE_CACHE_REL
Ensure-Directory $MODEL_SMOKE
Ensure-Directory $FEATURE_CACHE
docker run --rm `
-v "${SMOKE_DATA}:/challenge/training_data:ro" `
-v "${MODEL_SMOKE}:/challenge/model" `
-v "${FEATURE_CACHE}:/challenge/.feature_cache" `
$IMAGE_NAME `
python train_model.py -d training_data -m model -v
}
function Run-Full {
$RUN_DATA = Get-AbsolutePath $RUN_DATA_REL
$MODEL_FULL = Get-AbsolutePath $MODEL_FULL_REL
$OUT_FULL = Join-Path (Get-AbsolutePath ".") $OUT_FULL_REL
$FEATURE_CACHE = Join-Path (Get-AbsolutePath ".") $FEATURE_CACHE_REL
Ensure-Directory $OUT_FULL
Ensure-Directory $FEATURE_CACHE
docker run --rm `
-v "${RUN_DATA}:/challenge/holdout_data:ro" `
-v "${MODEL_FULL}:/challenge/model:ro" `
-v "${OUT_FULL}:/challenge/holdout_outputs" `
-v "${FEATURE_CACHE}:/challenge/.feature_cache" `
$IMAGE_NAME `
python run_model.py -d holdout_data -m model -o holdout_outputs -v
if (Test-DatasetHasLabels $RUN_DATA) {
Invoke-Evaluation $RUN_DATA $OUT_FULL "run-dataset"
} else {
Write-Host "Skipping evaluation for run dataset (labels not present in $RUN_DATA_REL/$DEMOGRAPHICS_FILE)."
}
}
function Run-Smoke {
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
$MODEL_SMOKE = Get-AbsolutePath $MODEL_SMOKE_REL
$OUT_SMOKE = Join-Path (Get-AbsolutePath ".") $OUT_SMOKE_REL
$FEATURE_CACHE = Join-Path (Get-AbsolutePath ".") $FEATURE_CACHE_REL
Ensure-Directory $OUT_SMOKE
Ensure-Directory $FEATURE_CACHE
docker run --rm `
-v "${SMOKE_DATA}:/challenge/holdout_data:ro" `
-v "${MODEL_SMOKE}:/challenge/model:ro" `
-v "${OUT_SMOKE}:/challenge/holdout_outputs" `
-v "${FEATURE_CACHE}:/challenge/.feature_cache" `
$IMAGE_NAME `
python run_model.py -d holdout_data -m model -o holdout_outputs -v
Invoke-Evaluation $SMOKE_DATA $OUT_SMOKE "smoke"
}
function Eval-Full {
$RUN_DATA = Get-AbsolutePath $RUN_DATA_REL
$OUT_FULL = Get-AbsolutePath $OUT_FULL_REL
if (Test-DatasetHasLabels $RUN_DATA) {
Invoke-Evaluation $RUN_DATA $OUT_FULL "run-dataset"
} else {
Write-Host "Skipping evaluation for run dataset (labels not present in $RUN_DATA_REL/$DEMOGRAPHICS_FILE)."
}
}
function Eval-Smoke {
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
$OUT_SMOKE = Get-AbsolutePath $OUT_SMOKE_REL
Invoke-Evaluation $SMOKE_DATA $OUT_SMOKE "smoke"
}
# ======================
# MODO DESARROLLO (SIN REBUILD)
# ======================
function Train-Dev {
$CODE_PATH = Get-AbsolutePath "."
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
$MODEL_SMOKE = Join-Path $CODE_PATH $MODEL_SMOKE_REL
Ensure-Directory $MODEL_SMOKE
docker run --rm `
-v "${CODE_PATH}:/challenge" `
-v "${SMOKE_DATA}:/challenge/training_data:ro" `
-v "${MODEL_SMOKE}:/challenge/model" `
$IMAGE_NAME `
python train_model.py -d training_data -m model -v
}
function Run-Dev {
$CODE_PATH = Get-AbsolutePath "."
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
$MODEL_SMOKE = Get-AbsolutePath $MODEL_SMOKE_REL
$OUT_SMOKE = Join-Path $CODE_PATH $OUT_SMOKE_REL
Ensure-Directory $OUT_SMOKE
docker run --rm `
-v "${CODE_PATH}:/challenge" `
-v "${SMOKE_DATA}:/challenge/holdout_data:ro" `
-v "${MODEL_SMOKE}:/challenge/model:ro" `
-v "${OUT_SMOKE}:/challenge/holdout_outputs" `
$IMAGE_NAME `
python run_model.py -d holdout_data -m model -o holdout_outputs -v
Invoke-EvaluationDev $CODE_PATH $SMOKE_DATA "/challenge/holdout_outputs" "development smoke"
}
function Eval-Dev {
$CODE_PATH = Get-AbsolutePath "."
$SMOKE_DATA = Get-AbsolutePath $SMOKE_DATA_REL
Invoke-EvaluationDev $CODE_PATH $SMOKE_DATA "/challenge/holdout_outputs" "development smoke"
}
function Clean-All {
Remove-Item -Recurse -Force $MODEL_FULL_REL -ErrorAction SilentlyContinue
Remove-Item -Recurse -Force $MODEL_SMOKE_REL -ErrorAction SilentlyContinue
Remove-Item -Recurse -Force $OUT_FULL_REL -ErrorAction SilentlyContinue
Remove-Item -Recurse -Force $OUT_SMOKE_REL -ErrorAction SilentlyContinue
Write-Host "Modelos y outputs eliminados."
}
# ============================================
# SWITCH PRINCIPAL
# ============================================
switch ($Command) {
"build" { Build-Image }
"smoke" { Create-Smoke }
"train" { Train-Full }
"train-smoke" { Train-Smoke }
"run" { Run-Full }
"run-smoke" { Run-Smoke }
"eval" { Eval-Full }
"eval-smoke" { Eval-Smoke }
"train-dev" { Train-Dev }
"run-dev" { Run-Dev }
"eval-dev" { Eval-Dev }
"clean" { Clean-All }
}