Fix documentation workflow

- Update .gitignore to exclude mlruns/, *.db, docs-mkdocs/site/
- Fix Makefile to only commit docs-mkdocs/, workflows, and Makefile
- Remove unwanted files from git tracking (mlruns data, build artifacts)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: allenanie

.gitignore

@@ -168,4 +168,16 @@ OAI_CONFIG_LIST
 *.gv.pdf
 
 # jupyter book API output
-docs/api/*
+docs/api/*
+
+# MLflow tracking data
+mlruns/
+mlruns.db
+*.db
+
+# MkDocs build output (site/ is generated, not tracked)
+docs-mkdocs/site/
+
+# Local test notebooks and temp files
+tests/optimizer_*.ipynb
+examples/mlflow_autolog_example.py

Makefile

@@ -62,7 +62,7 @@ publish:
 	@$(MAKE) build
 	@echo ""
 	@echo "💾 Committing changes..."
-	@git add .
+	@git add docs-mkdocs/ .github/workflows/docs.yml Makefile
 	@if git diff --staged --quiet; then \
 		echo "ℹ️  No changes to commit"; \
 	else \